Evidence map›Paper›PMID 36658495›Full record

ArticleBMC microbiology2023

An RpoN-dependent PEP-CTERM gene is involved in floc formation of an Aquincola tertiaricarbonis strain.

Ming Xia, Dianzhen Yu, Han Chen, Jingcheng Dai, Na Gao, Shuyang Li, Xuezhi Bi, Dongru Qiu

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 60% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Ming XiaSchool of Life Sciences, Hubei Engineering Research Center for Protection and Utilization of Special Biological Resources in the Hanjiang River Basin, Jianghan University, Wuhan, 430056, China.
Dianzhen YuUniversity of Chinese Academy of Sciences, Beijing, 100049, China.
Han ChenUniversity of Chinese Academy of Sciences, Beijing, 100049, China.
Jingcheng DaiInstitute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, Hubei Province, China.
Na GaoFisheries Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230031, China.
Shuyang LiInstitute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, Hubei Province, China.
Xuezhi BiBioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, 138668, Singapore.
Dongru QiuInstitute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, Hubei Province, China. qiu@ihb.ac.cn.
Chinese Academy of Sciences · CNInstitute of Hydrobiology · CNAnhui Academy of Agricultural Sciences · CNBioprocessing Technology Institute · SGJianghan University · CNShanghai Institutes for Biological Sciences · CN

Funding

Innovative Research Team Foundation of the Department of Education of Hubei Province, China T2020034Key Research and Development Program of Anhui Province 2022107020008National Key R&D Program of China 2019YFA0905500National Natural Science Foundation of China 31900095
6 · The paper itself

Abstract

backgroundThe floc is a characteristic of microbial aggregate growth, displaying cloudy suspensions in water. Floc formation has been demonstrated in a series of bacteria and the floc-forming bacteria play a crucial role in activated sludge (AS) process widely used for municipal sewage and industrial wastewater treatment over a century. It has been demonstrated that some exopolysaccharide biosynthesis genes and the sigma factor (sigma54 or rpoN) were required for floc forming in some bacteria. However, the mechanism underlying the floc formation stills need to be elucidated.

resultsIn this study, we demonstrate that a TPR (Tetratricopeptide repeats) protein-encoding gene prsT is required for floc formation of Aquincola tertiaricarbonis RN12 and an upstream PEP-CTERM gene (designated pepA), regulated by RpoN1, is involved in its floc formation but not swarming motility and biofilm formation. Overexpression of PepA could rescue the floc-forming phenotype of the rpoN1 mutant by decreasing the released soluble exopolysaccharides and increasing the bound polymers.

conclusionOur results indicate that the wide-spread PEP-CTERM proteins play an important role in the self-flocculation of bacterial cells and may be a component of extracellular polymeric substances required for floc-formation.

Indexed as

BurkholderialesSewageBacteriaFlocculationProteinsProteinsSewageAquincola tertiaricarbonisBacterial floc formationFlocculationPEP-CTERM proteinsRpoN sigma factor

Identifiers

PMID36658495
PMCPMC9850573
OpenAlexW4317401755

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.