Evidence map›Paper›PMID 36658169›Full record

ArticleNature communications2023

Sex-specificity of the C. elegans metabolome.

Russell N Burkhardt, Alexander B Artyukhin, Erin Z Aprison, Brian J Curtis, Bennett W Fox, Andreas H Ludewig, Diana Fajardo Palomino, Jintao Luo, Amaresh Chaturbedi, Oishika Panda and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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  14. Oligonucleotide Catabolism-Derived Gluconucleosides inJournal of the American Chemical Society · 2023
    Article
  15. bioRxiv : the preprint server for biology · 2023
    Article
  16. AbioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Russell N BurkhardtBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Alexander B ArtyukhinBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Erin Z AprisonDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Brian J CurtisBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Bennett W FoxBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0002-9749-3491
Andreas H LudewigBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Diana Fajardo PalominoBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Jintao LuoDepartment of Biomedical Genetics, University of Rochester, Rochester, NY, 14642, USA.
Amaresh ChaturbediDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.
Oishika PandaBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.
Chester J J WrobelBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0001-6047-4644
Victor BaumannBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0003-2121-8968
Douglas S PortmanDepartment of Biomedical Genetics, University of Rochester, Rochester, NY, 14642, USA.ORCID 0000-0003-2686-8839
Siu Sylvia LeeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.
Ilya RuvinskyDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA. ilya.ruvinsky@northwestern.edu.ORCID 0000-0002-8318-3679
Frank C SchroederBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA. fs31@cornell.edu.ORCID 0000-0002-4420-0237
Cornell University · USNorthwestern University · USState University of New York · USUniversity of Rochester · USXiamen University · CN

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Small molecule signaling in C. elegansR35GM131877 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI Frank Clemens Schroeder · 2019 to 2026
$5.0M
Portal for Open Computational Metabolomics Tools - Yr 4 U2C SupplementU2CES030167 · NIEHS · UNIVERSITY OF GEORGIA · PI EDISON, ARTHUR S · 2018 to 2021
$4.2M
Training future leaders at the chemistry-biology interfaceT32GM138826 · NIGMS · CORNELL UNIVERSITY · PI Jeremy Baskin · 2021 to 2026
$2.6M
Neurogenetic Mechanisms Controlling Functional Maturation of Neural Circuits and BehaviorR01GM140415 · NIGMS · UNIVERSITY OF ROCHESTER · PI PORTMAN, DOUGLAS S · 2021 to 2023
$924k
NIEHS NIH HHS U2C ES030167NIGMS NIH HHS R01 GM140415NIGMS NIH HHS R35 GM131877NIGMS NIH HHS T32 GM138826NIH HHS P40 OD010440
6 · The paper itself

Abstract

Recent studies of animal metabolism have revealed large numbers of novel metabolites that are involved in all aspects of organismal biology, but it is unclear to what extent metabolomes differ between sexes. Here, using untargeted comparative metabolomics for the analysis of wildtype animals and sex determination mutants, we show that C. elegans hermaphrodites and males exhibit pervasive metabolomic differences. Several hundred small molecules are produced exclusively or in much larger amounts in one sex, including a host of previously unreported metabolites that incorporate building blocks from nucleoside, carbohydrate, lipid, and amino acid metabolism. A subset of male-enriched metabolites is specifically associated with the presence of a male germline, whereas enrichment of other compounds requires a male soma. Further, we show that one of the male germline-dependent metabolites, an unusual dipeptide incorporating N,N-dimethyltryptophan, increases food consumption, reduces lifespan, and accelerates the last stage of larval development in hermaphrodites. Our results serve as a foundation for mechanistic studies of how the genetic sex of soma and germline shape the C. elegans metabolome and provide a blueprint for the discovery of sex-dependent metabolites in other animals.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsLongevityMaleMetabolomeMetabolomicsCaenorhabditis elegans Proteins

Identifiers

PMID36658169
PMCPMC9852247
OpenAlexW4317437087

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.