Evidence map›Paper›PMID 36658154›Full record

ArticleScientific reports2023

Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980.

Edward Spinard, Vivian O'Donnell, Elizabeth Vuono, Ayushi Rai, Charronne Davis, Elizabeth Ramirez-Medina, Nallely Espinoza, Alyssa Valladares, Manuel V Borca, Douglas P Gladue

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Edward SpinardPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Vivian O'DonnellPlum Island Animal Disease Center, Animal and Plant Health Inspection Service, USDA, Greenport, NY, 11944, USA.
Elizabeth VuonoPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Ayushi RaiPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Charronne DavisATCC Federal Solutions, ATCC, 10801 University Blvd, Manassas, VA, 20110, USA.
Elizabeth Ramirez-MedinaPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Nallely EspinozaPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Alyssa ValladaresPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA.
Manuel V BorcaPlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA. Manuel.Borca@usda.gov.
Douglas P GladuePlum Island Animal Disease Center, Agricultural Research Service, USDA, Greenport, NY, 11944, USA. Douglas.Gladue@usda.gov.
Agricultural Research Service · USPlum Island Animal Disease Center · USAmerican Type Culture Collection · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African swine fever is a lethal disease of domestic pigs, geographically expanding as a pandemic, that is affecting countries across Eurasia and severely damaging their swine production industry. After more than 40 years of being absent in the Western hemisphere, in 2020 ASF reappeared in the Dominican Republic and Haiti. The recent outbreak strain in the Dominican Republic has been identified as a genotype II ASFV a derivative of the ASF strain circulating in Asia and Europe. However, to date no full-length genome sequence from either the 1978-1980 Here we report the complete genome sequence of an African swine fever virus (ASFV) (DR-1980) that was previously isolated from blood collected in 1980 from the Dominican Republic at the end of the last outbreak, before culling of all swine on the island of Hispaniola and stored in the Plum Island Animal Disease Center ASFV repository. A contig representing the full-length genome (183,687 base pairs) was de novo assembled into a single contig using both Nanopore and Illumina sequences. DR-1980 was determined to belong to genotype I and, as determined by full genome comparison, a close relative to the sequenced Sardinia viruses that were causing outbreaks at this time.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDisease OutbreaksDominican RepublicSus scrofaSwine

Identifiers

PMID36658154
PMCPMC9852453
OpenAlexW4317435385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.