Evidence map›Paper›PMID 36656607›Full record

ArticleEurographics/IEEE VGTC Symposium on Visualization : EUROVIS : [proceedings]. Eurographics/IEEE VGTC Symposium on Visualization2022

CellTrackVis: analyzing the performance of cell tracking algorithms.

W Li, X Zhang, A Stern, M Birtwistle, F Iuricich

Open access · greenAbstract read
In one paragraph

Article in Eurographics/IEEE VGTC Symposium on Visualization : EUROVIS : [proceedings]. Eurographics/IEEE VGTC Symposium on Visualization, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

W LiSchool of Computing, Clemson University, United States.
X ZhangSchool of Computing, Clemson University, United States.
A SternIcahn School of Medicine at Mount Sinai, New York, United States.
M BirtwistleDepartment of Chemical and Biomolecular Engineering, Clemson University, United States.
F IuricichSchool of Computing, Clemson University, United States.
Clemson University · USIcahn School of Medicine at Mount Sinai · US

Funding

Mechanistic Pharmacodynamic Modeling for Drug Combination ResponsesR35GM141891 · NIGMS · CLEMSON UNIVERSITY · PI BIRTWISTLE, MARC R. · 2021 to 2025
$2.1M
NIGMS NIH HHS R35 GM141891
6 · The paper itself

Abstract

Live-cell imaging is a common data acquisition technique used by biologists to analyze cell behavior. Since manually tracking cells in a video sequence is extremely time-consuming, many automatic algorithms have been developed in the last twenty years to accomplish the task. However, none of these algorithms can yet claim robust tracking performance at the varying of acquisition conditions (e.g., cell type, acquisition device, cell treatments). While many visualization tools exist to help with cell behavior analysis, there are no tools to help with the algorithm's validation. This paper proposes CellTrackVis, a new visualization tool for evaluating cell tracking algorithms. CellTrackVis allows comparing automatically generated cell tracks with ground truth data to help biologists select the best-suited algorithm for their experimented pipeline. Moreover, CellTackVis can be used as a debugging tool while developing a new cell tracking algorithm to investigate where, when, and why each tracking error occurred.

Identifiers

PMID36656607
PMCPMC9841471
OpenAlexW4317475544

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.