Evidence map›Paper›PMID 36655738›Full record

ArticleeLife2023

Temporal derivative computation in the dorsal raphe network revealed by an experimentally driven augmented integrate-and-fire modeling framework.

Emerson F Harkin, Michael B Lynn, Alexandre Payeur, Jean-François Boucher, Léa Caya-Bissonnette, Dominic Cyr, Chloe Stewart, André Longtin, Richard Naud, Jean-Claude Béïque

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. A hardwired neural circuit for temporal difference learning.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Deep Learning-Based Ion Channel Kinetics Analysis for Automated Patch Clamp Recording.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Emerson F HarkinBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0003-0698-5894
Michael B LynnBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0003-0760-4555
Alexandre PayeurBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0002-2437-8249
Jean-François BoucherBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.
Léa Caya-BissonnetteBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0002-2893-6949
Dominic CyrBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.
Chloe StewartBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.
André LongtinBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0003-0678-9893
Richard NaudBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0001-7383-3095
Jean-Claude BéïqueBrain and Mind Research Institute, Centre for Neural Dynamics, Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, Canada.ORCID 0000-0001-7278-4906
University of Ottawa · CA

Funding

CIHR 175319CIHR 175325
6 · The paper itself

Abstract

By means of an expansive innervation, the serotonin (5-HT) neurons of the dorsal raphe nucleus (DRN) are positioned to enact coordinated modulation of circuits distributed across the entire brain in order to adaptively regulate behavior. Yet the network computations that emerge from the excitability and connectivity features of the DRN are still poorly understood. To gain insight into these computations, we began by carrying out a detailed electrophysiological characterization of genetically identified mouse 5-HT and somatostatin (SOM) neurons. We next developed a single-neuron modeling framework that combines the realism of Hodgkin-Huxley models with the simplicity and predictive power of generalized integrate-and-fire models. We found that feedforward inhibition of 5-HT neurons by heterogeneous SOM neurons implemented divisive inhibition, while endocannabinoid-mediated modulation of excitatory drive to the DRN increased the gain of 5-HT output. Our most striking finding was that the output of the DRN encodes a mixture of the intensity and temporal derivative of its input, and that the temporal derivative component dominates this mixture precisely when the input is increasing rapidly. This network computation primarily emerged from prominent adaptation mechanisms found in 5-HT neurons, including a previously undescribed dynamic threshold. By applying a bottom-up neural network modeling approach, our results suggest that the DRN is particularly apt to encode input changes over short timescales, reflecting one of the salient emerging computations that dominate its output to regulate behavior.

Indexed as

Dorsal Raphe NucleusSerotoninAnimalsMiceNeural Networks, ComputerNeuronsSerotoninadaptationcomputational biologydorsal raphemedial prefrontal cortexmouseneuroscienceserotoninsingle neuron modelsspiking neural networkssystems biology

Identifiers

PMID36655738
PMCPMC9977298
OpenAlexW4317478017

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.