Evidence map›Paper›PMID 36653740›Full record

ArticleBMC microbiology2023

Prediction and validation of novel SigB regulon members in Bacillus subtilis and regulon structure comparison to Bacillales members.

Kah Yen Claire Yeak, Jos Boekhorst, Michiel Wels, Tjakko Abee, Marjon H J Wells-Bennik

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Expression of theApplied and environmental microbiology · 2026
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  2. Nocturnal hydration prepares desert cyanobacteria for dawn-light harvesting by inducing phycoerythrin synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Article
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  5. Gene expression dynamics inFrontiers in microbiology · 2025
    Article
  6. Quantitative Aspect ofBiology · 2024
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kah Yen Claire YeakNIZO, Ede, The Netherlands.
Jos BoekhorstNIZO, Ede, The Netherlands.
Michiel WelsNIZO, Ede, The Netherlands.
Tjakko AbeeFood Microbiology, Wageningen University and Research, Wageningen, The Netherlands.
Marjon H J Wells-BennikNIZO, Ede, The Netherlands. Marjon.Wells-Bennik@nizo.com.
Nederlands Instituut Voor Zuivel Oonderzoek · NLRijk Zwaan (Netherlands) · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSigma factor B (SigB) is the central regulator of the general stress response in Bacillus subtilis and regulates a group of genes in response to various stressors, known as the SigB regulon members. Genes that are directly regulated by SigB contain a promotor binding motif (PBM) with a previously identified consensus sequence.

resultsIn this study, refined SigB PBMs were derived and different spacer compositions and lengths (N

conclusionThe entire SigB regulatory network is sophisticated and not yet fully understood even for the well-characterized organism B. subtilis 168. Knowledge and information gained in this study can be used in further SigB studies to uncover a complete picture of the role of SigB in B. subtilis and other species.

Indexed as

BacillalesBacillus subtilisBacterial ProteinsEthanolGene Expression Regulation, BacterialHeat-Shock ResponseRegulonSigma FactorBacterial ProteinsEthanolSigma FactorGeneral stress responseListeria monocytogenesRsbKYRsbQPRsbRSTSigB consensusSigB promoter binding motifStaphylococcus aureus

Identifiers

PMID36653740
PMCPMC9847131
OpenAlexW4317105199

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.