Evidence map›Paper›PMID 36653527›Full record

ReviewNature protocols2023

Seed amplification assay for the detection of pathologic alpha-synuclein aggregates in cerebrospinal fluid.

Luis Concha-Marambio, Sandra Pritzkow, Mohammad Shahnawaz, Carly M Farris, Claudio Soto

Open access · greenAbstract readReview
In one paragraph

Review in Nature protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
44.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 218 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Review
  4. microRNA-7-5p and α-Synuclein SAA Predict Parkinson's Disease Phenoconversion.Annals of clinical and translational neurology · 2026
    Article
  5. Lasker~Bloomberg Public Service Award to Michael J. Fox: The challenge of Parkinson's disease.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Deep learning-based MRI analysis reveals Lewy body co-pathology accelerates brain aging in Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Luis Concha-MarambioR&D Unit, Amprion Inc., San Diego, CA, USA.ORCID 0000-0002-9454-8389
Sandra PritzkowMitchell Center for Alzheimer's Disease and Related Brain Disorders, University of Texas McGovern Medical School, Houston, TX, USA.
Mohammad ShahnawazMitchell Center for Alzheimer's Disease and Related Brain Disorders, University of Texas McGovern Medical School, Houston, TX, USA.
Carly M FarrisR&D Unit, Amprion Inc., San Diego, CA, USA.
Claudio SotoR&D Unit, Amprion Inc., San Diego, CA, USA. claudio.soto@uth.tmc.edu.ORCID 0000-0002-3412-0524
Amprion (United States) · USCritical Technologies (United States) · US

Funding

Production and Distribution of well-characterized polymorphic variants of alpha-synuclein aggregatesU24AG079685 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CLAUDIO SOTO · 2022 to 2026
$3.8M
Misfolded Protein Aggregates in HIV infectionR01AG061069 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARDUINO, ROBERTO CLAUDIO, SOTO, CLAUDIO · 2018 to 2022
$3.5M
Comprehensive diagnosis of Alzheimer's disease by detection of misfolded oligomers in biological fluidsRF1AG055053 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SOTO, CLAUDIO · 2019 to 2019
$2.9M
Differentiation and characterization of conformational alpha-synuclein strains associated with Parkinson's disease and related synucleinopathiesR01NS119689 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Sandra Pritzkow, Mohammad Shahnawaz · 2021 to 2026
$2.6M
Role of circulating Abeta seeds and peripheral tissue damage in Alzheimer's disease pathogenesisR01AG059321 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MORALES, RODRIGO, SOTO, CLAUDIO · 2024 to 2024
$718k
Development of Blood Based Diagnosis of Parkinson's DiseaseR21NS114884 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SHAHNAWAZ, MOHAMMAD · 2020 to 2020
$428k
NIA NIH HHS R01 AG059321NIA NIH HHS R01 AG061069NIA NIH HHS RF1 AG055053NIA NIH HHS U24 AG079685NINDS NIH HHS NS119689NINDS NIH HHS R01 NS119689NINDS NIH HHS R21 NS114884
6 · The paper itself

Abstract

Misfolded alpha-synuclein (αSyn) aggregates are a hallmark event in Parkinson's disease (PD) and other synucleinopathies. Recently, αSyn seed amplification assays (αSyn-SAAs) have shown promise as a test for biochemical diagnosis of synucleinopathies. αSyn-SAAs use the intrinsic self-replicative nature of misfolded αSyn aggregates (seeds) to multiply them in vitro. In these assays, αSyn seeds circulating in biological fluids are amplified by a cyclical process that includes aggregate fragmentation into smaller self-propagating seeds, followed by elongation at the expense of recombinant αSyn (rec-αSyn). Amplification of the seeds allows detection by fluorescent dyes specific for amyloids, such as thioflavin T. Several αSyn-SAA reports have been published in the past under the names 'protein misfolding cyclic amplification' (αSyn-PMCA) and 'real-time quaking-induced conversion'. Here, we describe a protocol for αSyn-SAA, originally reported as αSyn-PMCA, which allows detection of αSyn aggregates in cerebrospinal fluid samples from patients affected by PD, dementia with Lewy bodies or multiple-system atrophy (MSA). Moreover, this αSyn-SAA can differentiate αSyn aggregates from patients with PD versus those from patients with MSA, even in retrospective samples from patients with pure autonomic failure who later developed PD or MSA. We also describe modifications to the original protocol introduced to develop an optimized version of the assay. The optimized version shortens the assay length, decreases the amount of rec-αSyn required and reduces the number of inconclusive results. The protocol has a hands-on time of ~2 h per 96-well plate and can be performed by personnel trained to perform basic experiments with specimens of human origin.

Indexed as

Parkinson DiseaseSynucleinopathiesalpha-SynucleinHumansRetrospective Studiesalpha-Synuclein

Identifiers

PMID36653527
PMCPMC10561622
OpenAlexW4317242213

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.