Evidence map›Paper›PMID 36653361›Full record

ArticleNature communications2023

Smarcd3 is an epigenetic modulator of the metabolic landscape in pancreatic ductal adenocarcinoma.

L Paige Ferguson, Jovylyn Gatchalian, Matthew L McDermott, Mari Nakamura, Kendall Chambers, Nirakar Rajbhandari, Nikki K Lytle, Sara Brin Rosenthal, Michael Hamilton, Sonia Albini and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. SMARCD1 and Its Functional Relevance in SWI/SNF and Cancer.International journal of molecular sciences · 2026
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  17. Frontiers in cell and developmental biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 3 countries.

L Paige FergusonDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Jovylyn GatchalianSalk Institute for Biological Studies, La Jolla, CA, USA.
Matthew L McDermottDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Mari NakamuraDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Kendall ChambersDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.ORCID 0000-0001-6367-780X
Nirakar RajbhandariDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Nikki K LytleSalk Institute for Biological Studies, La Jolla, CA, USA.
Sara Brin RosenthalCenter for Computational Biology and Bioinformatics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Michael HamiltonDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Sonia AlbiniGenethon, 91000, EVRY, France.
Martin WartenbergInstitute of Pathology, University of Bern, Murtenstrasse 31, 3008, Bern, Switzerland.ORCID 0000-0002-5378-3825
Inti ZlobecInstitute of Pathology, University of Bern, Murtenstrasse 31, 3008, Bern, Switzerland.
José A GalvánInstitute of Pathology, University of Bern, Murtenstrasse 31, 3008, Bern, Switzerland.ORCID 0000-0003-3138-7642
Eva KaramitopoulouInstitute of Pathology, University of Bern, Murtenstrasse 31, 3008, Bern, Switzerland.ORCID 0000-0002-4833-1373
Vera VavinskayaDepartment of Pathology, University of California San Diego School of Medicine, La Jolla, CA, USA.
Alexis WascherMoores Cancer Center, University of California San Diego School of Medicine, La Jolla, CA, USA.
Andrew M LowyMoores Cancer Center, University of California San Diego School of Medicine, La Jolla, CA, USA.
Christian M SchürchDepartment of Pathology and Neuropathology, University Hospital and Comprehensive Cancer Center Tübingen, Tübingen, Germany.ORCID 0000-0002-1792-1768
Pier Lorenzo PuriDevelopment, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.ORCID 0000-0003-4964-0095
Benoit G BruneauGladstone Institutes, Roddenberry Center for Stem Cell Biology and Medicine, San Francisco, CA, USA.ORCID 0000-0002-0804-7597
Diana C HargreavesSalk Institute for Biological Studies, La Jolla, CA, USA. dhargreaves@salk.edu.ORCID 0000-0003-3724-3826
Tannishtha ReyaDepartment of Pharmacology, University of California San Diego School of Medicine, La Jolla, CA, USA. tr2726@cumc.columbia.edu.ORCID 0000-0002-5956-8536
University of California San Diego · USUniversity of Bern · CHSalk Institute for Biological Studies · USColumbia University Irving Medical Center · USGladstone Institutes · USInserm · FRSanford Burnham Prebys Medical Discovery Institute · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Molecular strategies for early detection and targeting of cancerR35CA197699 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Tannishtha Reya · 2015 to 2026
$11.2M
Salk Institute Cancer Training GrantT32CA009370 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Diana Clare Hargreaves, Jan Karlseder · 1986 to 2026
$8.6M
Blood Cells in Hemostasis and ThrombosisT32HL086344 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GINSBERG, MARK HOWARD · 2008 to 2023
$4.4M
Musashi-mediated control of pancreatic cancer growth and progressionR01CA186043 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOWY, ANDREW M, REYA, TANNISHTHA · 2015 to 2019
$2.1M
Defining the role of BRD9-BAF in embryonic stem cell pluripotencyF32GM128377 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI GATCHALIAN, JOVYLYN · 2018 to 2019
$120k
Defining the role of chromatin remodeling complexes in pancreatic cancer stem cellsF31CA247489 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FERGUSON, LESLEY PAIGE · 2020 to 2021
$78k
NCI NIH HHS F31 CA247489NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA186043NCI NIH HHS R35 CA197699NCI NIH HHS T32 CA009370NHLBI NIH HHS T32 HL086344NIGMS NIH HHS F32 GM128377NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

Pancreatic cancer is characterized by extensive resistance to conventional therapies, making clinical management a challenge. Here we map the epigenetic dependencies of cancer stem cells, cells that preferentially evade therapy and drive progression, and identify SWI/SNF complex member SMARCD3 as a regulator of pancreatic cancer cells. Although SWI/SNF subunits often act as tumor suppressors, we show that SMARCD3 is amplified in cancer, enriched in pancreatic cancer stem cells and upregulated in the human disease. Diverse genetic mouse models of pancreatic cancer and stage-specific Smarcd3 deletion reveal that Smarcd3 loss preferentially impacts established tumors, improving survival especially in context of chemotherapy. Mechanistically, SMARCD3 acts with FOXA1 to control lipid and fatty acid metabolism, programs associated with therapy resistance and poor prognosis in cancer. These data identify SMARCD3 as an epigenetic modulator responsible for establishing the metabolic landscape in aggressive pancreatic cancer cells and a potential target for new therapies.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsAnimalsEpigenesis, GeneticHumansMiceTranscription FactorsTranscription Factors

Identifiers

PMID36653361
PMCPMC9849267
OpenAlexW4317212035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.