Evidence map›Paper›PMID 36652515›Full record

ArticleScience advances2023

The structure of DarB in complex with Rel

Andres Ainelo, Julien Caballero-Montes, Ondřej Bulvas, Karin Ernits, Kyo Coppieters 't Wallant, Hiraku Takada, Sophie Z Craig, Gabriel Mazzucchelli, Safia Zedek, Iva Pichová and 5 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 5 countries.

Andres AineloCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.ORCID 0000-0003-4073-3359
Julien Caballero-MontesCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.
Ondřej BulvasInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nam. 2, 166 10 Prague 6, Czech Republic.ORCID 0000-0003-3945-4408
Karin ErnitsDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden.ORCID 0000-0003-1072-4945
Kyo Coppieters 't WallantCentre for Structural Biology and Bioinformatics, Universite Libre de Bruxelles (ULB), Boulevard du Triomphe, Building BC, 1050 Bruxelles, Belgium.ORCID 0000-0003-2358-999X
Hiraku TakadaDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden.ORCID 0000-0003-2034-5666
Sophie Z CraigCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.ORCID 0000-0001-6525-5053
Gabriel MazzucchelliMass Spectrometry Laboratory, MolSys Research Unit, Liège Université, B-4000 Liège, Belgium.ORCID 0000-0002-8757-8133
Safia ZedekCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.
Iva PichováInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nam. 2, 166 10 Prague 6, Czech Republic.
Gemma C AtkinsonDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden.ORCID 0000-0002-4861-4584
Ariel TalaveraCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.ORCID 0000-0002-1865-5959
Chloe MartensCentre for Structural Biology and Bioinformatics, Universite Libre de Bruxelles (ULB), Boulevard du Triomphe, Building BC, 1050 Bruxelles, Belgium.ORCID 0000-0002-1617-4238
Vasili HauryliukDepartment of Experimental Medical Science, Lund University, 221 00 Lund, Sweden.ORCID 0000-0003-2389-5057
Abel Garcia-PinoCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles 10 (ULB), Boulevard du Triomphe, Building BC (1C4 203), 1050 Brussels, Belgium.ORCID 0000-0002-0634-0300
Université Libre de Bruxelles · BELund University · SECzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZKyoto Sangyo University · JPUniversity of Liège · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rel stringent factors are bifunctional ribosome-associated enzymes that catalyze both synthesis and hydrolysis of the alarmones (p)ppGpp. Besides the allosteric control by starved ribosomes and (p)ppGpp, Rel is regulated by various protein factors depending on specific stress conditions, including the c-di-AMP-binding protein DarB. However, how these effector proteins control Rel remains unknown. We have determined the crystal structure of the DarB

Identifiers

PMID36652515
PMCPMC9848473
OpenAlexW4317254709

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.