Evidence map›Paper›PMID 36652335›Full record

ArticleMolecular biology of the cell2023

Interactions between TULP3 tubby domain and ARL13B amphipathic helix promote lipidated protein transport to cilia.

Vivek Reddy Palicharla, Sun-Hee Hwang, Bandarigoda N Somatilaka, Emilie Legué, Issei S Shimada, Nicole E Familiari, Vanna M Tran, Jeffrey B Woodruff, Karel F Liem, Saikat Mukhopadhyay

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. GPR45 modulates GαScience (New York, N.Y.) · 2025
    Article
  11. The intraflagellar transport cycle.Nature reviews. Molecular cell biology · 2025
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Phosphoinositides in New Spaces.Cold Spring Harbor perspectives in biology · 2023
    Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Vivek Reddy PalicharlaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Sun-Hee HwangDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Bandarigoda N SomatilakaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Emilie LeguéVertebrate Developmental Biology Program, Department of Pediatrics, Yale University School of Medicine, New Haven, CT 06520.
Issei S ShimadaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Nicole E FamiliariDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Vanna M TranDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Jeffrey B WoodruffDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Karel F LiemVertebrate Developmental Biology Program, Department of Pediatrics, Yale University School of Medicine, New Haven, CT 06520.
Saikat MukhopadhyayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
The University of Texas Southwestern Medical Center · USYale University · US

Funding

UT Southwestern NORCP30DK127984 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Jeffrey M Zigman · 2022 to 2026
$7.4M
Molecular, material, and structural design principles of centrosomesR35GM142522 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Jeffrey B Woodruff · 2021 to 2026
$2.5M
Tubulin Beta 4a in central nervous system development and diseaseR01NS097928 · NINDS · YALE UNIVERSITY · PI LIEM, KAREL F · 2016 to 2020
$2.5M
Role of primary cilium-generated signaling in polycystic kidney diseaseR01DK128089 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI MUKHOPADHYAY, SAIKAT · 2022 to 2025
$2.4M
Signaling at the primary cilium in development and diseaseR35GM144136 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Saikat Mukhopadhyay · 2022 to 2026
$1.6M
Spinning Disk Confocal for UT SouthwesternS10OD028630 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2020 to 2020
$600k
Cellular Mechanisms of Renal Cystic DiseaseR56DK132266 · NIDDK · YALE UNIVERSITY · PI LIEM, KAREL F · 2022 to 2022
$100k
NIDDK NIH HHS P30 DK127984NIDDK NIH HHS R01 DK128089NIDDK NIH HHS R56 DK132266NIGMS NIH HHS R35 GM142522NIGMS NIH HHS R35 GM144136NIH HHS S10 OD028630NINDS NIH HHS R01 NS097928
6 · The paper itself

Abstract

The primary cilium is a nexus for cell signaling and relies on specific protein trafficking for function. The tubby family protein TULP3 transports integral membrane proteins into cilia through interactions with the intraflagellar transport complex-A (IFT-A) and phosphoinositides. It was previously shown that short motifs called ciliary localization sequences (CLSs) are necessary and sufficient for TULP3-dependent ciliary trafficking of transmembrane cargoes. However, the mechanisms by which TULP3 regulates ciliary compartmentalization of nonintegral, membrane-associated proteins and whether such trafficking requires TULP3-dependent CLSs is unknown. Here we show that TULP3 is required for ciliary transport of the Joubert syndrome-linked palmitoylated GTPase ARL13B through a CLS. An N-terminal amphipathic helix, preceding the GTPase domain of ARL13B, couples with the TULP3 tubby domain for ciliary trafficking, irrespective of palmitoylation. ARL13B transport requires TULP3 binding to IFT-A but not to phosphoinositides, indicating strong membrane-proximate interactions, unlike transmembrane cargo transport requiring both properties of TULP3. TULP3-mediated trafficking of ARL13B also regulates ciliary enrichment of farnesylated and myristoylated downstream effectors of ARL13B. The lipidated cargoes show distinctive depletion kinetics from kidney epithelial cilia with relation to

Indexed as

CiliaMembrane ProteinsGTP PhosphohydrolasesPhosphatidylinositolsProtein TransportGTP PhosphohydrolasesMembrane ProteinsPhosphatidylinositols

Identifiers

PMID36652335
PMCPMC10011728
OpenAlexW4317241293

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.