Evidence map›Paper›PMID 36651871›Full record

ArticleACR open rheumatology2023

Transcriptome Profiling of Immune Cell Types in Peripheral Blood Reveals Common and Specific Pathways Involved in the Pathogenesis of Myositis-Specific Antibody-Positive Inflammatory Myopathies.

Yusuke Sugimori, Yukiko Iwasaki, Yusuke Takeshima, Mai Okubo, Satomi Kobayashi, Hiroaki Hatano, Saeko Yamada, Masahiro Nakano, Ryochi Yoshida, Mineto Ota and 10 more

Open access · goldAbstract read
In one paragraph

Article in ACR open rheumatology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Targeting B Cells for the Treatment of Idiopathic Inflammatory Myopathy.Clinical reviews in allergy & immunology · 2025
    Review
  7. Article
  8. CD73RMD open · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Yusuke SugimoriThe University of Tokyo and Tokyo Metropolitan Bokutoh Hospital, Tokyo, Japan.ORCID https://orcid.org/0000-0001-7549-6491
Yukiko IwasakiThe University of Tokyo, Tokyo, Japan, and Saitama Medical University, Saitama, Japan.ORCID https://orcid.org/0000-0002-5786-0760
Yusuke TakeshimaThe University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0001-8312-9309
Mai OkuboThe University of Tokyo, Tokyo, Japan.
Satomi KobayashiThe University of Tokyo, Tokyo, Japan.
Hiroaki HatanoThe University of Tokyo, Tokyo, Japan.
Saeko YamadaThe University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0001-8561-4463
Masahiro NakanoThe University of Tokyo, Tokyo, Japan.
Ryochi YoshidaThe University of Tokyo, Tokyo, Japan.
Mineto OtaThe University of Tokyo, Tokyo, Japan.
Yumi TsuchidaThe University of Tokyo, Tokyo, Japan.
Yasuo NagafuchiThe University of Tokyo, Tokyo, Japan.
Kenichi ShimaneTokyo Metropolitan Bokutoh Hospital, Tokyo, Japan.
Ken YoshidaThe Jikei University School of Medicine, Tokyo, Japan.ORCID https://orcid.org/0000-0002-5351-3227
Daitaro KurosakaThe Jikei University School of Medicine, Tokyo, Japan.
Shuji SumitomoThe University of Tokyo, Tokyo, Japan.
Hirofumi ShodaThe University of Tokyo, Tokyo, Japan.
Kazuhiko YamamotoUniversity of Tokyo, Japan, and RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Tomohisa OkamuraThe University of Tokyo, Tokyo, Japan.
Keishi FujioThe University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0001-7276-5254
The University of Tokyo · JPJikei University School of Medicine · JPTokyo Metropolitan Bokutoh Hospital · JPRIKEN Center for Integrative Medical Sciences · JPSaitama University · JP

Funding

Chugai Pharmaceutical Co. Ltd.Japan Agency for Medical Research and Development JP21tm0424221Japan Agency for Medical Research and Development JP21zf0127004
6 · The paper itself

Abstract

objectiveIdiopathic inflammatory myopathies (IIM) demonstrate characteristic clinical phenotypes depending on the myositis-specific antibody (MSAs) present. We aimed to identify common or MSA-specific immunological pathways in different immune cell types from peripheral blood by transcriptome analysis.

methodsWe recruited 33 patients with IIM who were separated into the following groups: 15 patients with active disease at onset and 18 with inactive disease under treatment. All patients were positive for MSAs: anti-melanoma differentiation-associated gene 5 (MDA5) antibody (Ab) in 10 patients, anti-Mi-2 Ab in 7, and anti-aminoacyl-transfer RNA synthetase (ARS) Ab in 16. The patients were compared with 33 healthy controls. Twenty-four immune cell types sorted from peripheral blood were analyzed by flow cytometry, RNA sequencing, and differentially expressed gene analysis combined with pathway analysis.

resultsThe frequencies of memory B cell types were significantly decreased in active patients, and the frequency of plasmablasts was prominently increased in active patients with anti-MDA5 Ab in comparison with healthy controls. The expression of type I interferon (IFN)-stimulated genes of all immune cell types was increased in the active, but not inactive, patients. Endoplasmic reticulum stress-related genes in all IIM memory B cells and oxidative phosphorylation-related genes in inactive IIM double negative B cells were also increased, suggesting prominent B cell activation in IIM. Furthermore, active patients with anti-MDA5 Ab, anti-Mi-2 Ab, or anti-ARS Ab were distinguished by IFN-stimulated and oxidative phosphorylation-related gene expression in plasmablasts.

conclusionUnique gene expression patterns in patients with IIM with different disease activity levels and MSA types suggest different pathophysiologies. Especially, B cells may contribute to common and MSA-specific immunological pathways in IIM.

Identifiers

PMID36651871
PMCPMC9926062
OpenAlexW4317214207

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.