Evidence map›Paper›PMID 36651831›Full record

ArticleJournal of inherited metabolic disease2023

Fractionated plasma N-glycan profiling of novel cohort of ATP6AP1-CDG subjects identifies phenotypic association.

Hana Alharbi, Earnest James Paul Daniel, Jenny Thies, Irene Chang, Dana L Goldner, Bobby G Ng, Peter Witters, Amal Aqul, Frances Velez-Bartolomei, Gregory M Enns and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of inherited metabolic disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. [ATPase HZhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 13 institutions in 5 countries.

Hana AlharbiDepartment of Pediatrics, Faculty of Medicine, University of Tabuk, Tabuk, Saudi Arabia.ORCID 0000-0002-6139-2816
Earnest James Paul DanielDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Jenny ThiesDivision of Genetic Medicine, Seattle Children's Hospital, Seattle, Washington, USA.
Irene ChangDivision of Genetic Medicine, Department of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA.
Dana L GoldnerDivision of Pediatric Gastroenterology, Hepatology and Nutrition, Columbia University Medical Center, New York, New York, USA.
Bobby G NgHuman Genetics Program, Sanford Burnham Prebys, La Jolla, California, USA.
Peter WittersDepartment of Pediatric Gastroenterology, Hepatology and Nutrition, Center for Metabolic Diseases, University Hospital Leuven, Leuven, Belgium.
Amal AqulDivision of Pediatric Gastroenterology, Hepatology and Nutrition, Department of Pediatrics, University of Texas Southwestern/Children's Medical Center, Dallas, Texas, USA.
Frances Velez-BartolomeiGenetics Section, San Jorge Children and Women's Hospital in San Juan, San Juan, Puerto Rico, USA.
Gregory M EnnsDivision of Medical Genetics, Department of Pediatrics, Lucile Packard Children's Hospital and Stanford University, Stanford, California, USA.
Evelyn HsuDivision of Gastroenterology and Hepatology, Department of Pediatrics, Seattle Children's Hospital, University of Washington School of Medicine, Seattle, Washington, USA.
Elizabeth KichulaDivision of Neurology, Departments of Pediatrics and Neurology, Children's Hospital of Philadelphia and the Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Esther LeeGenetic Services, Kaiser Permanente of Washington, Seattle, Washington, USA.
Charles LourencoFaculdade de Medicina de São José do Rio Preto (FAMERP), São Jose do Rio Preto - São Paulo, Brazil.ORCID 0000-0002-2296-6098
Sheri A PoskanzerSt. Luke's Health System, Boise, Idaho, USA.ORCID 0000-0001-9629-8398
Sara RasmussenTransplant Center, Department of Surgery, Seattle Children's Hospital University of Washington School of Medicine Seattle, Seattle, Washington, USA.
Katelyn SaarelaDivision of Gastroenterology and Hepatology, Department of Pediatrics, Seattle Children's Hospital, University of Washington School of Medicine, Seattle, Washington, USA.
YunZu M WangDivision of Bone Marrow Transplantation and Immune Deficiency, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Kimiyo M RaymondDepartment of Laboratory Medicine and Pathology, Laboratory Genetics and Genomics, Mayo Clinic, Rochester, Minnesota, USA.
Matthew J SchultzDepartment of Laboratory Medicine and Pathology, Laboratory Genetics and Genomics, Mayo Clinic, Rochester, Minnesota, USA.
Hudson H FreezeHuman Genetics Program, Sanford Burnham Prebys, La Jolla, California, USA.ORCID 0000-0001-6316-0501
Christina LamDivision of Genetic Medicine, Department of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA.
Andrew C EdmondsonDepartment of Pediatrics, Division of Human Genetics, Section of Metabolism, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0000-0003-0313-0743
Miao HeDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Children's Hospital of Philadelphia · USSeattle Children's Hospital · USLucile Packard Children's Hospital · USMayo Clinic · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of Washington · USChildren's Medical Center · USCincinnati Children's Hospital Medical Center · USColumbia University Irving Medical Center · USFaculdade de Medicina de São José do Rio Preto · BRKaiser Permanente · USKU Leuven · BESaint Luke's Health System · US

Funding

Pilot and Feasibility CoreU54NS115198 · NINDS · MAYO CLINIC ROCHESTER · PI MORAVA-KOZICZ, EVA · 2019 to 2023
$8.2M
New Congenital Disorders of Glycosylation: Therapy and ModelsR01DK099551 · NIDDK · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Hudson H. Freeze · 2014 to 2026
$6.7M
NIDDK NIH HHS R01 DK099551NIH HHS R01DK99551NINDS NIH HHS U54 NS115198
6 · The paper itself

Abstract

ATP6AP1-CDG is an X-linked disorder typically characterized by hepatopathy, immunodeficiency, and an abnormal type II transferrin glycosylation pattern. Here, we present 11 new patients and clinical updates with biochemical characterization on one previously reported patient. We also document intrafamilial phenotypic variability and atypical presentations, expanding the symptomatology of ATP6AP1-CDG to include dystonia, hepatocellular carcinoma, and lysosomal abnormalities on hepatic histology. Three of our subjects received successful liver transplantation. We performed N-glycan profiling of total and fractionated plasma proteins for six patients and show associations with varying phenotypes, demonstrating potential diagnostic and prognostic value of fractionated N-glycan profiles. The aberrant N-linked glycosylation in purified transferrin and remaining plasma glycoprotein fractions normalized in one patient post hepatic transplant, while the increases of Man4GlcNAc2 and Man5GlcNAc2 in purified immunoglobulins persisted. Interestingly, in the single patient with isolated immune deficiency phenotype, elevated high-mannose glycans were detected on purified immunoglobulins without glycosylation abnormalities on transferrin or the remaining plasma glycoprotein fractions. Given the diverse and often tissue specific clinical presentations and the need of clinical management post hepatic transplant in ATP6AP1-CDG patients, these results demonstrate that fractionated plasma N-glycan profiling could be a valuable tool in diagnosis and disease monitoring.

Indexed as

Congenital Disorders of GlycosylationVacuolar Proton-Translocating ATPasesGlycoproteinsHumansHydrolasesImmunoglobulinsPhenotypePolysaccharidesTransferrinATP6AP1 protein, humanGlycoproteinsHydrolasesImmunoglobulinsPolysaccharidesTransferrinVacuolar Proton-Translocating ATPasesATP6AP1-CDGcongenital disorder of glycosylationdystoniahyperkinetic movementimmunodeficiencyliver failure

Identifiers

PMID36651831
PMCPMC10047170
OpenAlexW4317213267

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.