Evidence map›Paper›PMID 36651456›Full record

ArticleMemorias do Instituto Oswaldo Cruz2023

Detection and genome characterisation of SARS-CoV-2 P.6 lineage in dogs and cats living with Uruguayan COVID-19 patients.

Yanina Panzera, Santiago Mirazo, Mariana Baz, Claudia Techera, Sofía Grecco, Florencia Cancela, Eddie Fuques, Emma Condon, Lucía Calleros, Natalia Camilo and 6 more

Open access · greenAbstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Yanina PanzeraUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.ORCID http://orcid.org/0000-0002-7459-7810
Santiago MirazoUniversidad de la República, Facultad de Ciencias, Sección Virología, Montevideo, Uruguay.
Mariana BazWHO Collaborating Centre for Reference and Research on Influenza, Peter Doherty Institute, Melbourne, Victoria, Australia.
Claudia TecheraUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Sofía GreccoUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Florencia CancelaUniversidad de la República, Facultad de Ciencias, Sección Virología, Montevideo, Uruguay.
Eddie FuquesUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Emma CondonUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Lucía CallerosUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Natalia CamiloUniversidad de la República, Facultad de Veterinaria, Unidad de Clínica y Hospital Veterinario, Montevideo, Uruguay.
Andrea FregossiUniversidad de la República, Facultad de Veterinaria, Unidad de Clínica y Hospital Veterinario, Montevideo, Uruguay.
Inés VazUniversidad de la República, Facultad de Veterinaria, Unidad de Clínica y Hospital Veterinario, Montevideo, Uruguay.
Paula PessinaUniversidad de la República, Facultad de Veterinaria, Laboratorio Clínico del Hospital Veterinario, Montevideo, Uruguay.
Nikita DeshpandeWHO Collaborating Centre for Reference and Research on Influenza, Peter Doherty Institute, Melbourne, Victoria, Australia.
Ruben PérezUniversidad de la República, Facultad de Ciencias, Instituto de Biología, Departamento de Biología Animal, Sección Genética Evolutiva, Montevideo, Uruguay.
Alejandro BenechUniversidad de la República, Facultad de Veterinaria, Unidad de Clínica y Hospital Veterinario, Montevideo, Uruguay.
Universidad de la República de Uruguay · UYVictorian Infectious Diseases Reference Laboratory · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections in domestic animals have occurred from the beginning of the pandemic to the present time. Therefore, from the perspective of One Health, investigating this topic is of global scientific and public interest.

objectivesThe present study aimed to determine the presence of SARS-CoV-2 in domestic animals whose owners had coronavirus disease 2019 (COVID-19).

methodsNasopharyngeal and faecal samples were collected in Uruguay. Using quantitative polymerase chain reaction (qPCR), we analysed the presence of the SARS-CoV-2 genome. Complete genomes were obtained using ARTIC enrichment and Illumina sequencing. Sera samples were used for virus neutralisation assays.

findingsSARS-CoV-2 was detected in an asymptomatic dog and a cat. Viral genomes were identical and belonged to the P.6 Uruguayan SARS-CoV-2 lineage. Only antiserum from the infected cat contained neutralising antibodies against the ancestral SARS-CoV-2 strain and showed cross-reactivity against the Delta but not against the B.A.1 Omicron variant. MAIN

conclusionsDomestic animals and the human SARS-CoV-2 P.6 variant comparison evidence a close relationship and gene flow between them. Different SARS-CoV-2 lineages infect dogs and cats, and no specific variants are adapted to domestic animals. This first record of SARS-CoV-2 in domestic animals from Uruguay supports regular surveillance of animals close to human hosts.

Indexed as

Cat DiseasesCOVID-19Dog DiseasesAnimalsAnimals, DomesticCatsDogsHumansSARS-CoV-2Uruguay

Identifiers

PMID36651456
PMCPMC9870267
OpenAlexW4317360463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.