Evidence map›Paper›PMID 36647534›Full record

ArticleBiophysical reports2023

Pressure, motion, and conformational entropy in molecular recognition by proteins.

José A Caro, Kathleen G Valentine, Taylor R Cole, A Joshua Wand

Open access · goldAbstract read
In one paragraph

Article in Biophysical reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Deep mining of the protein energy landscape.Structural dynamics (Melville, N.Y.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

José A CaroDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, Texas.
Kathleen G ValentineDepartment of Biochemistry & Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Taylor R ColeDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, Texas.
A Joshua WandDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, Texas.
Texas A&M University · USUniversity of Pennsylvania · US

Funding

The role of the free energy landscape in Parkin's function and dysfunction in health and diseaseR01GM129076 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI WAND, A. JOSHUA · 2020 to 2023
$1.6M
NIGMS NIH HHS R01 GM129076
6 · The paper itself

Abstract

The thermodynamics of molecular recognition by proteins is a central determinant of complex biochemistry. For over a half-century, detailed cryogenic structures have provided deep insight into the energetic contributions to ligand binding by proteins. More recently, a dynamical proxy based on NMR-relaxation methods has revealed an unexpected richness in the contributions of conformational entropy to the thermodynamics of ligand binding. Here, we report the pressure dependence of fast internal motion within the ribonuclease barnase and its complex with the protein barstar. In what we believe is a first example, we find that protein dynamics are conserved along the pressure-binding thermodynamic cycle. The femtomolar affinity of the barnase-barstar complex exists despite a penalty by -TΔS

Identifiers

PMID36647534
PMCPMC9840116
OpenAlexW4313256331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.