Evidence map›Paper›PMID 36646746›Full record

ArticleScientific reports2023

Monitoring phage-induced lysis of gram-negatives in real time using a fluorescent DNA dye.

Julia E Egido, Catherine Toner-Bartelds, Ana Rita Costa, Stan J J Brouns, Suzan H M Rooijakkers, Bart W Bardoel, Pieter-Jan Haas

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Prophage: agent provocateur?Archives of microbiology · 2026
    Review
  6. The Potential Roles of Prophages in the Pathogenicity ofAntibiotics (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. An essential and highly selective protein import pathway encoded by nucleus-forming phage.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Design and Synthesis of Novel Antimicrobial Agents.Antibiotics (Basel, Switzerland) · 2023
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Julia E EgidoMedical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0001-6590-2054
Catherine Toner-BarteldsMedical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Ana Rita CostaDepartment of Bionanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0001-6749-6408
Stan J J BrounsDepartment of Bionanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0002-9573-1724
Suzan H M RooijakkersMedical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Bart W BardoelMedical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0001-6450-277X
Pieter-Jan HaasMedical Microbiology, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands. p.j.a.haas@umcutrecht.nl.ORCID 0000-0002-1127-095X
Utrecht University · NLDelft University of Technology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophages (phages) are viruses that specifically attack bacteria. Their use as therapeutics, which constitutes a promising alternative to antibiotics, heavily relies on selecting effective lytic phages against the pathogen of interest. Current selection techniques are laborious and do not allow for direct visualization of phage infection dynamics. Here, we present a method that circumvents these limitations. It can be scaled for high-throughput and permits monitoring of the phage infection in real time via a fluorescence signal readout. This is achieved through the use of a membrane-impermeant nucleic acid dye that stains the DNA of damaged or lysed bacteria and new phage progeny. We have tested the method on Pseudomonas aeruginosa and Klebsiella pneumoniae and show that an increase in fluorescence reflects phage-mediated killing. This is confirmed by other techniques including spot tests, colony plating, flow cytometry and metabolic activity measurements. Furthermore, we illustrate how our method may be used to compare the activity of different phages and to screen the susceptibility of clinical isolates to phage. Altogether, we present a fast, reliable way of selecting phages against Gram-negative bacteria, which may be valuable in optimizing the process of selecting phages for therapeutic use.

Indexed as

BacteriophagesFluorescent DyesAnti-Bacterial AgentsBacteriaDNAAnti-Bacterial AgentsDNAFluorescent Dyes

Identifiers

PMID36646746
PMCPMC9842612
OpenAlexW4316928042

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.