Evidence map›Paper›PMID 36645207›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2023

A chromosome-level genome assembly of the Henosepilachna vigintioctomaculata provides insights into the evolution of ladybird beetles.

Wenbo Zhu, Shengqi Chi, Yanchun Wang, Haorong Li, Zhongkai Wang, Songdong Gu, Ting Sun, Hui Xiang, Ping You, Yandong Ren

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
7.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Comparative Transcriptome Analysis ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. The genome sequence of the orange ladybird,Wellcome open research · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Wenbo ZhuCollege of Life Sciences, Shaanxi Normal University, Xi'an 710062, China.
Shengqi ChiKey Laboratory of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China.
Yanchun WangCollege of Science and Information, Qingdao Agricultural University, Qingdao 266109, China.
Haorong LiSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China.
Zhongkai WangSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710072, China.
Songdong GuKey Laboratory of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China.
Ting SunCollege of Life Sciences, Shaanxi Normal University, Xi'an 710062, China.
Hui XiangGuangdong Provincial Key Laboratory of Insect Developmental Biology and Applied Technology, Institute of Insect Science and Technology, School of Life Sciences, South China Normal University, Guangzhou 510631, China.
Ping YouCollege of Life Sciences, Shaanxi Normal University, Xi'an 710062, China.ORCID 0000-0002-2913-1544
Yandong RenCollege of Life Sciences, Shaanxi Normal University, Xi'an 710062, China.ORCID 0000-0003-1595-8994
Shaanxi Normal University · CNQingdao Agricultural University · CNNorthwestern Polytechnical University · CNSouth China Normal University · CN

Funding

Modern Agriculture Industrial Technology System Funding of Shandong Province SDAIT-16-06National Natural Science Foundation of China 32000383
6 · The paper itself

Abstract

The ladybird beetle Henosepilachna vigintioctomaculata is an economically significant oligophagous pest that induces damage to many Solanaceae crops. An increasing number of studies have examined the population and phenotype diversity of ladybird beetles. However, few comparative genome analyses of ladybird beetle species have been conducted. Here, we obtained a high-quality chromosome-level genome assembly of H. vigintioctomaculata using various sequencing technologies, and the chromosome-level genome assembly was ~581.63 Mb, with 11 chromosomes successfully assembled. The phylogenetic analysis showed that H. vigintioctomaculata is a more ancient lineage than the other three sequenced ladybird beetles, Harmonia axyridis, Propylea japonica, and Coccinella septempunctata. We also compared positively selected genes (PSGs), transposable elements (TEs) ratios and insertion times, and key gene families associated with environmental adaptation among these ladybird beetles. The pattern of TEs evolution of H. vigintioctomaculata differs from the other three ladybird beetles. The PSGs were associated with ladybird beetles development. However, the key gene families associated with environmental adaptation in ladybird beetles varied. Overall, the high-quality draft genome sequence of H. vigintioctomaculata provides a useful resource for studies of beetle biology, especially for the invasive biology of ladybird beetles.

Indexed as

ColeopteraAnimalsChromosomesPhylogenyHenosepilachna vigintioctomaculatapositively selected genessex chromosometransposable elements

Identifiers

PMID36645207
PMCPMC9936504
OpenAlexW4316469461

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.