Evidence map›Paper›PMID 36639877›Full record

ArticleJournal of experimental botany2023

Comparative phyloproteomics identifies conserved plasmodesmal proteins.

Matthew G Johnston, Andrew Breakspear, Sebastian Samwald, Dan Zhang, Diana Papp, Christine Faulkner, Jeroen de Keijzer

Open access · hybridFull text read
In one paragraph

Article in Journal of experimental botany, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

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  16. A PDLP-NHL3 complex integrates plasmodesmal immune signaling cascades.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Matthew G JohnstonDepartment of Cell and Developmental Biology, John Innes Centre, UK.ORCID 0000-0003-1141-6135
Andrew BreakspearDepartment of Cell and Developmental Biology, John Innes Centre, UK.ORCID 0000-0002-1863-3012
Sebastian SamwaldDepartment of Cell and Developmental Biology, John Innes Centre, UK.ORCID 0000-0003-4401-8862
Dan ZhangDepartment of Cell and Developmental Biology, John Innes Centre, UK.
Diana PappDepartment of Cell and Developmental Biology, John Innes Centre, UK.ORCID 0000-0002-2732-7543
Christine FaulknerDepartment of Cell and Developmental Biology, John Innes Centre, UK.ORCID 0000-0003-3905-8077
Jeroen de KeijzerLaboratory of Cell Biology, Wageningen University and Research, Wageningen, The Netherlands.ORCID 0000-0002-5175-9178
John Innes Centre · GBWageningen University & Research · NL

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9796
6 · The paper itself

Abstract

Plasmodesmata are cytosolic bridges, lined by the plasma membrane and traversed by endoplasmic reticulum; plasmodesmata connect cells and tissues, and are critical for many aspects of plant biology. While plasmodesmata are notoriously difficult to extract, tissue fractionation and proteomic analyses can yield valuable knowledge of their composition. Here we have generated two novel proteomes to expand tissue and taxonomic representation of plasmodesmata: one from mature Arabidopsis leaves and one from the moss Physcomitrium patens, and leveraged these and existing data to perform a comparative analysis to identify evolutionarily conserved protein families that are associated with plasmodesmata. Thus, we identified β-1,3-glucanases, C2 lipid-binding proteins, and tetraspanins as core plasmodesmal components that probably serve as essential structural or functional components. Our approach has not only identified elements of a conserved plasmodesmal proteome, but also demonstrated the added power offered by comparative analysis for recalcitrant samples. Conserved plasmodesmal proteins establish a basis upon which ancient plasmodesmal function can be further investigated to determine the essential roles these structures play in multicellular organism physiology in the green lineages.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembranePlasmodesmataProteomeProteomicsArabidopsis ProteinsProteomeArabidopsiscell to cell communicationphyloproteomicsPhyscomitrium patensplasmodesmataproteomics

Identifiers

PMID36639877
PMCPMC10049917
OpenAlexW4316174746

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read12
measurements read51
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.