Evidence map›Paper›PMID 36639683›Full record

ArticleParasites & vectors2023

High-throughput analysis of the transcriptional patterns of sexual genes in malaria.

Abel Cruz Camacho, Edo Kiper, Sonia Oren, Nir Zaharoni, Netta Nir, Noam Soffer, Yael Noy, Bar Ben David, Anna Rivkin, Ron Rotkopf and 3 more

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Abel Cruz Camacho *Faculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Edo Kiper *Faculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Sonia OrenFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Nir ZaharoniFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Netta NirFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Noam SofferFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Yael NoyFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Bar Ben DavidFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Anna RivkinFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Ron RotkopfDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Dan MichaelFeinberg Graduate School, Weizmann Institute of Science, 7610001, Rehovot, Israel.
Teresa G CarvalhoDepartment of Microbiology, Anatomy, Physiology and Pharmacology, La Trobe University, Melbourne, VIC, 3086, Australia.
Neta Regev-RudzkiFaculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel. neta.regev-rudzki@weizmann.ac.il.
Weizmann Institute of Science · ILLa Trobe University · AU

Funding

Horizon 2020 757743Israel Science Foundation 570/21
6 · The paper itself

Abstract

backgroundPlasmodium falciparum (Pf) is the leading protozoan causing malaria, the most devastating parasitic disease. To ensure transmission, a small subset of Pf parasites differentiate into the sexual forms (gametocytes). Since the abundance of these essential parasitic forms is extremely low within the human host, little is currently known about the molecular regulation of their sexual differentiation, highlighting the need to develop tools to investigate Pf gene expression during this fundamental mechanism.

methodsWe developed a high-throughput quantitative Reverse-Transcription PCR (RT-qPCR) platform to robustly monitor Pf transcriptional patterns, in particular, systematically profiling the transcriptional pattern of a large panel of gametocyte-related genes (GRG). Initially, we evaluated the technical performance of the systematic RT-qPCR platform to ensure it complies with the accepted quality standards for: (i) RNA extraction, (ii) cDNA synthesis and (iii) evaluation of gene expression through RT-qPCR. We then used this approach to monitor alterations in gene expression of a panel of GRG upon treatment with gametocytogenesis regulators.

resultsWe thoroughly elucidated GRG expression profiles under treatment with the antimalarial drug dihydroartemisinin (DHA) or the metabolite choline over the course of a Pf blood cycle (48 h). We demonstrate that both significantly alter the expression pattern of PfAP2-G, the gametocytogenesis master regulator. However, they also markedly modify the developmental rate of the parasites and thus might bias the mRNA expression. Additionally, we screened the effect of the metabolites lactate and kynurenic acid, abundant in severe malaria, as potential regulators of gametocytogenesis.

conclusionsOur data demonstrate that the high-throughput RT-qPCR method enables studying the immediate transcriptional response initiating gametocytogenesis of the parasites from a very low volume of malaria-infected RBC samples. The obtained data expand the current knowledge of the initial alterations in mRNA profiles of GRG upon treatment with reported regulators. In addition, using this method emphasizes that asexual parasite stage composition is a crucial element that must be considered when interpreting changes in GRG expression by RT-qPCR, specifically when screening for novel compounds that could regulate Pf sexual differentiation.

Indexed as

Genes, ProtozoanPlasmodium falciparumAntimalarialsHumansMalariaReproductionAntimalarialsAutomatizationGametocyteGametocytogenesisGene expressionMalariaPlasmodium falciparumRT-qPCR

Identifiers

PMID36639683
PMCPMC9838061
OpenAlexW4315865833

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.