Evidence map›Paper›PMID 36639538›Full record

ArticleThe ISME journal2023

Potential for mercury methylation by Asgard archaea in mangrove sediments.

Cui-Jing Zhang, Yu-Rong Liu, Guihong Cha, Yang Liu, Xin-Quan Zhou, Zhongyi Lu, Jie Pan, Mingwei Cai, Meng Li

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 22 citations in OpenAlex.

  1. Impacts of pollution on the soil microbiome.Nature reviews. Microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Cui-Jing Zhang *Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China.ORCID 0000-0003-0904-5531
Yu-Rong Liu *State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, 430070, Wuhan, China.ORCID 0000-0003-1112-4255
Guihong ChaKey Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, China.
Yang LiuArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China.ORCID 0000-0002-1109-0756
Xin-Quan ZhouState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, 430070, Wuhan, China.
Zhongyi LuArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China.
Jie PanArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China.ORCID 0000-0002-7431-9837
Mingwei CaiArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China.ORCID 0000-0002-2757-6742
Meng LiArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060, Shenzhen, China. limeng848@szu.edu.cn.ORCID 0000-0001-8675-0758
Shenzhen University · CNHuazhong Agricultural University · CNBiogas Institute of Ministry of Agriculture · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methylmercury (MeHg) is a potent neurotoxin that bioaccumulates along food chains. The conversion of MeHg from mercury (Hg) is mediated by a variety of anaerobic microorganisms carrying hgcAB genes. Mangrove sediments are potential hotspots of microbial Hg methylation; however, the microorganisms responsible for Hg methylation are poorly understood. Here, we conducted metagenomic and metatranscriptomic analyses to investigate the diversity and distribution of putative microbial Hg-methylators in mangrove ecosystems. The highest hgcA abundance and expression occurred in surface sediments in Shenzhen, where the highest MeHg concentration was also observed. We reconstructed 157 metagenome-assembled genomes (MAGs) carrying hgcA and identified several putative novel Hg-methylators, including one Asgard archaea (Lokiarchaeota). Further analysis of MAGs revealed that Deltaproteobacteria, Euryarchaeota, Bacteroidetes, Chloroflexi, and Lokiarchaeota were the most abundant and active Hg-methylating groups, implying their crucial role in MeHg production. By screening publicly available MAGs, 104 additional Asgard MAGs carrying hgcA genes were identified from a wide range of coast, marine, permafrost, and lake sediments. Protein homology modelling predicts that Lokiarchaeota HgcAB proteins contained the highly conserved amino acid sequences and folding structures required for Hg methylation. Phylogenetic tree revealed that hgcA genes from Asgard clustered with fused hgcAB genes, indicating a transitional stage of Asgard hgcA genes. Our findings thus suggest that Asgard archaea are potential novel Hg-methylating microorganisms and play an important role in hgcA evolution.

Indexed as

MercuryMethylmercury CompoundsArchaeaEcosystemGeologic SedimentsMethylationPhylogenyMercuryMethylmercury Compounds

Identifiers

PMID36639538
PMCPMC9938162
OpenAlexW4316035709

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.