Evidence map›Paper›PMID 36638790›Full record

ArticleStem cell reports2023

Unusual X chromosome inactivation maintenance in female alveolar type 2 cells is correlated with increased numbers of X-linked escape genes and sex-biased gene expression.

Isabel Sierra, Sarah Pyfrom, Aaron Weiner, Gan Zhao, Amanda Driscoll, Xiang Yu, Brian D Gregory, Andrew E Vaughan, Montserrat C Anguera

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Activation of Angiotensin-Converting Enzyme 2 Mitigates Gastrointestinal Acute Radiation Syndrome.International journal of radiation oncology, biology, physics · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. The conneXion between sex and immune responses.Nature reviews. Immunology · 2024
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Isabel SierraDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Sarah PyfromDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Aaron WeinerDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Gan ZhaoDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Amanda DriscollDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Xiang YuJoint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
Brian D GregoryDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Andrew E VaughanDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA; Institute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Penn Lung Biology Institute, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: vaughan@vet.upenn.edu.
Montserrat C AngueraDepartment of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA; Institute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: anguera@vet.upenn.edu.
University of Pennsylvania · USCalifornia Institute for Regenerative Medicine · USShanghai Jiao Tong University · CN

Funding

Gene regulation mechanisms involving the inactive X in B cells during lupus diseaseR01AI134834 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Montserrat C Anguera · 2018 to 2026
$4.2M
Immune System Development and RegulationT32AI055428 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ALLMAN, DAVID M, OLIVER, PAULA MARIA · 2003 to 2025
$4.2M
Solitary chemosensory / tuft cells in lung regeneration and inflammationR01HL153539 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI VAUGHAN, ANDREW · 2020 to 2024
$2.0M
Sex-Dependent Regulation of Host Factors Influencing SARS-CoV-2 Infection and COVID-19 DiseaseR21AI164006 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ANGUERA, MONTSERRAT C · 2022 to 2023
$443k
Identifying the Xist interactome during dynamic X inactivation in healthy and lupus-derived B cellsF32AI154797 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI PYFROM, SARAH CATHERINE · 2020 to 2022
$201k
Investigating the nuclear organization of the inactive X in female lymphocytesF31GM136073 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SIERRA, ISABEL · 2020 to 2022
$108k
NHLBI NIH HHS R01 HL153539NIAID NIH HHS F32 AI154797NIAID NIH HHS R01 AI134834NIAID NIH HHS R21 AI164006NIAID NIH HHS T32 AI055428NIGMS NIH HHS F31 GM136073
6 · The paper itself

Abstract

Sex differences exist for many lung pathologies, including COVID-19 and pulmonary fibrosis, but the mechanistic basis for this remains unclear. Alveolar type 2 cells (AT2s), which play a key role in alveolar lung regeneration, express the X-linked Ace2 gene that has roles in lung repair and SARS-CoV-2 pathogenesis, suggesting that X chromosome inactivation (XCI) in AT2s might impact sex-biased lung pathology. Here we investigate XCI maintenance and sex-specific gene expression profiles using male and female AT2s. Remarkably, the inactive X chromosome (Xi) lacks robust canonical Xist RNA "clouds" and less enrichment of heterochromatic modifications in human and mouse AT2s. We demonstrate that about 68% of expressed X-linked genes in mouse AT2s, including Ace2, escape XCI. There are genome-wide expression differences between male and female AT2s, likely influencing both lung physiology and pathophysiologic responses. These studies support a renewed focus on AT2s as a potential contributor to sex-biased differences in lung disease.

Indexed as

COVID-19RNA, Long NoncodingAngiotensin-Converting Enzyme 2AnimalsFemaleGenes, X-LinkedHumansMaleMiceSARS-CoV-2TranscriptomeX Chromosome InactivationAngiotensin-Converting Enzyme 2RNA, Long NoncodingAce2alveolar type 2 cellsheterochromatic modificationslung progenitorssex-biased gene expressionsex differencesX chromosome inactivationXCI escape genesXist RNA

Identifiers

PMID36638790
PMCPMC9968984
OpenAlexW4315705381

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.