Evidence map›Paper›PMID 36636866›Full record

ReviewThe FEBS journal2024

Bacterial usurpation of the OTU deubiquitinase fold.

Jonathan N Pruneda, Justine V Nguyen, Hiroki Nagai, Tomoko Kubori

Open access · bronzeAbstract readReview
In one paragraph

Review in The FEBS journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. iScience · 2026
    Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jonathan N PrunedaDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR, USA.ORCID 0000-0002-0304-4418
Justine V NguyenDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR, USA.
Hiroki NagaiDepartment of Microbiology, Graduate School of Medicine, Gifu University, Japan.
Tomoko KuboriDepartment of Microbiology, Graduate School of Medicine, Gifu University, Japan.ORCID 0000-0003-1098-6021
Oregon Health & Science University · USGifu University · JPInnovative Research (United States) · US

Funding

TRAINING PROGRAM IN HEALTH INFORMATICST15LM007088 · NLM · OREGON HEALTH & SCIENCE UNIVERSITY · PI WILLIAM R HERSH, Vishnu Mohan · 1992 to 2026
$23.4M
Exploiting bacterial effector proteins to study human ubiquitin signalingR35GM142486 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Jonathan N Pruneda · 2021 to 2026
$2.6M
Japan Society for the Promotion of Science 19H03469Japan Society for the Promotion of Science 19H03470Japan Society for the Promotion of Science 22H02867NIGMS NIH HHS R35 GM142486NIGMS NIH HHS R35GM142486NLM NIH HHS T15 LM007088Takeda Science FoundationU.S. National Library of Medicine T15LM007088
6 · The paper itself

Abstract

The extensive cellular signalling events controlled by posttranslational ubiquitination are tightly regulated through the action of specialized proteases termed deubiquitinases. Among them, the OTU family of deubiquitinases can play very specialized roles in the regulation of discrete subtypes of ubiquitin signals that control specific cellular functions. To exert control over host cellular functions, some pathogenic bacteria have usurped the OTU deubiquitinase fold as a secreted virulence factor that interferes with ubiquitination inside infected cells. Herein, we provide a review of the function of bacterial OTU deubiquitinases during infection, the structural basis for their deubiquitinase activities and the bioinformatic approaches leading to their identification. Understanding bacterial OTU deubiquitinases holds the potential for discoveries not only in bacterial pathogenesis but in eukaryotic biology as well.

Indexed as

Bacterial ProteinsDeubiquitinating EnzymesUbiquitinationAnimalsBacteriaHumansModels, MolecularProtein FoldingUbiquitinVirulence FactorsBacterial ProteinsDeubiquitinating EnzymesUbiquitinVirulence FactorsbacteriadeubiquitinaseinfectionOTUprotein predictionstructureubiquitin

Identifiers

PMID36636866
PMCPMC10338644
OpenAlexW4315928137

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.