Evidence map›Paper›PMID 36632736›Full record

ArticleHaematologica2023

TAL1 activation in T-cell acute lymphoblastic leukemia: a novel oncogenic 3' neo-enhancer.

Charlotte Smith, Ashish Goyal, Dieter Weichenhan, Eric Allemand, Anand Mayakonda, Umut Toprak, Anna Riedel, Estelle Balducci, Manisha Manojkumar, Anastasija Pejkovska and 10 more

Open access · goldAbstract read
In one paragraph

Article in Haematologica, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. PROTACs in cancer therapy: targeted degradation of GPX4, PARP and epigenetic regulators.Journal of enzyme inhibition and medicinal chemistry · 2026
    Review
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  12. Oncogenic Enhancers in Leukemia.Blood cancer discovery · 2024
    Review
  13. Transcription Factor MYB as Therapeutic Target: Current Developments.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Charlotte SmithUniversité de Paris Cité, Institut Necker Enfants-Malades (INEM), Institut National de la Santé et de la Recherche Médicale (Inserm) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Necker Enfants-Malades, 75743 Paris.
Ashish GoyalDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Dieter WeichenhanDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Eric AllemandUniversité de Paris Cité, Institut Imagine, Inserm U1163, Paris.
Anand MayakondaDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Umut ToprakHopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg, Germany; Division of Neuroblastoma Genomics, German Cancer Research Center (DKFZ), Heidelberg.
Anna RiedelDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Estelle BalducciUniversité de Paris Cité, Institut Necker Enfants-Malades (INEM), Institut National de la Santé et de la Recherche Médicale (Inserm) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Necker Enfants-Malades, 75743 Paris.
Manisha ManojkumarDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Anastasija PejkovskaDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Oliver MückeDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Etienne SollierDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Ali BakrDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Kersten BreuerDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Pavlo LutsikDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg.
Olivier HermineUniversité de Paris Cité, Institut Imagine, Inserm U1163, Paris, France; Department of Hematology, Hôpital Necker Enfants Malades, AP-HP, Faculté de Médecine Paris Descartes, Paris.
Salvatore SpicugliaAix-Marseille University, Inserm, Theories and Approaches of Genomic Complexity (TAGC), Equipe labellisée Ligue, UMR1090, 13288 Marseille.
Vahid AsnafiUniversité de Paris Cité, Institut Necker Enfants-Malades (INEM), Institut National de la Santé et de la Recherche Médicale (Inserm) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Necker Enfants-Malades, 75743 Paris.
Christoph PlassDivision of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany; German Cancer Research Consortium (DKTK), 69120 Heidelberg. c.plass@dkfz.de.
Aurore TouzartUniversité de Paris Cité, Institut Necker Enfants-Malades (INEM), Institut National de la Santé et de la Recherche Médicale (Inserm) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Necker Enfants-Malades, 75743 Paris, France; Division of Cancer Epigenomics, German Cancer Research Center (DKFZ), 69120 Heidelberg. aurore.touzart@aphp.fr.
Epigenomics (Germany) · DEGerman Cancer Research Center · DEHeidelberg University · DEAssistance Publique – Hôpitaux de Paris · FRInserm · FRAix-Marseille Université · FRHôpital Necker-Enfants Malades · FRInstitut Necker Enfants Malades · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-cell acute lymphocytic leukemia protein 1 (TAL1) is one of the most frequently deregulated oncogenes in T-cell acute lymphoblastic leukemia (T-ALL). Its deregulation can occur through diverse cis-alterations, including SIL-TAL1 microdeletions, translocations with T-cell Receptor loci, and more recently described upstream intergenic non-coding mutations. These mutations consist of recurrent focal microinsertions that create an oncogenic neo-enhancer accompanied by activating epigenetic marks. This observation laid the groundwork for an innovative paradigm concerning the activation of proto-oncogenes via genomic alterations of non-coding intergenic regions. However, for the majority of T-ALL expressing TAL1 (TAL1+), the deregulation mechanism remains 'unresolved'. We took advantage of H3K27ac and H3K4me3 chromatin immunoprecipitation sequencing data of eight cases of T-ALL, including five TAL1+ cases. We identified a putative novel oncogenic neo-enhancer downstream of TAL1 in an unresolved monoallelic TAL1+ case. A rare but recurrent somatic heterozygous microinsertion within this region creates a de novo binding site for MYB transcription factor. Here we demonstrate that this mutation leads to increased enhancer activity, gain of active epigenetic marks, and TAL1 activation via recruitment of MYB. These results highlight the diversity of non-coding mutations that can drive oncogene activation.

Indexed as

Enhancer Elements, GeneticPrecursor T-Cell Lymphoblastic Leukemia-LymphomaT-Cell Acute Lymphocytic Leukemia Protein 1Basic Helix-Loop-Helix ProteinsHumansMutationOncogene Proteins, FusionT-LymphocytesTranscription FactorsBasic Helix-Loop-Helix ProteinsOncogene Proteins, FusionSIL-TAL1 fusion protein, humanTAL1 protein, humanT-Cell Acute Lymphocytic Leukemia Protein 1Transcription Factors

Identifiers

PMID36632736
PMCPMC10153542
OpenAlexW4315752846

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.