Evidence map›Paper›PMID 36631662›Full record

ArticleCommunications biology2023

A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes.

Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Systematic Screening of Host Interactors forPlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genetic basis ofeLife · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Fernando Martínez *Instituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain.
José L Carrasco *Instituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain.ORCID 0000-0002-5905-8042
Christina ToftInstituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain.
Julia HillungInstituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain.
Silvia Giménez-SantamarinaInstituto de Biología Molecular y Celular de Plantas (IBMCP), CSIC - Universitat Politècnica de València, 46022, València, Spain.ORCID 0000-0001-8021-4348
Lynne YenushInstituto de Biología Molecular y Celular de Plantas (IBMCP), CSIC - Universitat Politècnica de València, 46022, València, Spain.ORCID 0000-0001-8589-7002
Guillermo Rodrigo *Instituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain. guillermo.rodrigo@csic.es.ORCID 0000-0002-1871-9617
Santiago F ElenaInstituto de Biología Integrativa de Sistemas (I2SysBio), CSIC - Universitat de València, 46980, Paterna, Spain. santiago.elena@csic.es.ORCID 0000-0001-8249-5593
Universitat de València · ESInstituto de Biología Molecular y Celular de Plantas · ESSanta Fe Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses are obligate intracellular parasites that have co-evolved with their hosts to establish an intricate network of protein-protein interactions. Here, we followed a high-throughput yeast two-hybrid screening to identify 378 novel protein-protein interactions between turnip mosaic virus (TuMV) and its natural host Arabidopsis thaliana. We identified the RNA-dependent RNA polymerase NIb as the viral protein with the largest number of contacts, including key salicylic acid-dependent transcription regulators. We verified a subset of 25 interactions in planta by bimolecular fluorescence complementation assays. We then constructed and analyzed a network comprising 399 TuMV-A. thaliana interactions together with intravirus and intrahost connections. In particular, we found that the host proteins targeted by TuMV are enriched in different aspects of plant responses to infections, are more connected and have an increased capacity to spread information throughout the cell proteome, display higher expression levels, and have been subject to stronger purifying selection than expected by chance. The proviral or antiviral role of ten host proteins was validated by characterizing the infection dynamics in the corresponding mutant plants, supporting a proviral role for the transcriptional regulator TGA1. Comparison with similar studies with animal viruses, highlights shared fundamental features in their mode of action.

Indexed as

ArabidopsisPotyvirusHost-Pathogen InteractionsProteomeProteome

Identifiers

PMID36631662
PMCPMC9834402
OpenAlexW4315645548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.