Evidence map›Paper›PMID 36631445›Full record

ArticleNature communications2023

Senescent cells perturb intestinal stem cell differentiation through Ptk7 induced noncanonical Wnt and YAP signaling.

Jina Yun, Simon Hansen, Otto Morris, David T Madden, Clare Peters Libeu, Arjun J Kumar, Cameron Wehrfritz, Aaron H Nile, Yingnan Zhang, Lijuan Zhou and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Mechanisms and therapeutic potential of therapy-induced cellular senescence in radiotherapy- and chemotherapy-related alimentary tract mucositis.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Multi-omics investigation into the role of PTK7 as a driver of liver fibrosis.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
    Article
  9. Article
  10. Review
  11. Review
  12. The Yin-Yang of Stress and Senescence: Integrated Stress Response and SASP Crosstalk in Stem Cell Fate, Regeneration, and Disease.Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al · 2026
    Article
  13. Article
  14. Review
  15. Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 4 countries.

Jina YunGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Simon HansenNBE Therapeutics, Hochbergstrasse 60C, 4057, Basel, Switzerland.
Otto MorrisExscientia Ltd., The Schrödinger Building Oxford Science Park, Oxford, OX4 4GE, UK.
David T MaddenBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, CA, 94945, USA.
Clare Peters LibeuBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, CA, 94945, USA.
Arjun J KumarFred Hutch/University of Washington, 1100 Fairview Ave. N., Seattle, WA, 98109, USA.ORCID 0000-0002-4354-5612
Cameron WehrfritzBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, CA, 94945, USA.
Aaron H NileCalico Labs LLC., 1170 Veterans Blvd, South San Francisco, CA, 94080, USA.ORCID 0000-0002-7370-8769
Yingnan ZhangGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Lijuan ZhouGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Yuxin LiangGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Zora ModrusanGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Michelle B ChenGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Christopher C OverallGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
David GarfieldGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Judith CampisiBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, CA, 94945, USA.ORCID 0000-0001-6858-9462
Birgit SchillingBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, CA, 94945, USA.ORCID 0000-0001-9907-2749
Rami N HannoushGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. ramih@gene.com.ORCID 0000-0001-9343-0955
Heinrich JasperGenentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. jasperh@gene.com.ORCID 0000-0002-6014-4343
Buck Institute for Research on Aging · USBioscientifica (United Kingdom) · GBGene Therapy Laboratory · FRNBE Therapeutics (Switzerland) · CHUniversity of Washington · US

Funding

Quantitative Proteomics to Develop Robust Senescence-Related Biomarkers for AgingU01AG060906 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI SCHILLING, BIRGIT · 2018 to 2022
$4.0M
Orbitrap Fusion Lumos ETD with FAIMS ProS10OD028654 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI SCHILLING, BIRGIT · 2020 to 2020
$1.1M
TripleTOF 5600 High Resolution Mass SpectrometerS10OD016281 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2013 to 2013
$597k
NIA NIH HHS U01 AG060906NIH HHS S10 OD016281NIH HHS S10 OD028654
6 · The paper itself

Abstract

Cellular senescence and the senescence-associated secretory phenotype (SASP) are implicated in aging and age-related disease, and SASP-related inflammation is thought to contribute to tissue dysfunction in aging and diseased animals. However, whether and how SASP factors influence the regenerative capacity of tissues remains unclear. Here, using intestinal organoids as a model of tissue regeneration, we show that SASP factors released by senescent fibroblasts deregulate stem cell activity and differentiation and ultimately impair crypt formation. We identify the secreted N-terminal domain of Ptk7 as a key component of the SASP that activates non-canonical Wnt / Ca

Indexed as

Cell DifferentiationReceptor Protein-Tyrosine KinasesStem CellsAgingAnimalsCellular SenescenceIntestinesMiceWnt Signaling PathwayYAP-Signaling ProteinsPtk7 protein, mouseReceptor Protein-Tyrosine KinasesYAP-Signaling Proteins

Identifiers

PMID36631445
PMCPMC9834240
OpenAlexW4315646805

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.