Evidence map›Paper›PMID 36631436›Full record

ArticleNature communications2023

The HAPSTR2 retrogene buffers stress signaling and resilience in mammals.

David R Amici, Harun Cingoz, Milad J Alasady, Sammy Alhayek, Claire M Phoumyvong, Nidhi Sahni, S Stephen Yi, Marc L Mendillo

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David R AmiciDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA.ORCID 0000-0003-3318-964X
Harun CingozDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA.ORCID 0000-0002-3814-585X
Milad J AlasadyDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA.
Sammy AlhayekDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA.ORCID 0000-0002-2351-4894
Claire M PhoumyvongDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA.
Nidhi SahniDepartment of Epigenetics and Molecular Carcinogenesis, and Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.ORCID 0000-0002-9155-5882
S Stephen YiLivestrong Cancer Institutes, Department of Oncology, and Department of Biomedical Engineering, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID 0000-0003-0047-8103
Marc L MendilloDept. of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60610, USA. mendillo@northwestern.edu.ORCID 0000-0001-8128-0128

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008152 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARDEHALI, HOSSEIN · 1987 to 2021
$24.0M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Network-based Framework to Decode Novel Gain-of-Function Mutations and their Mechanistic Roles in General Human DiseasesR35GM133658 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI S. Stephen Yi · 2019 to 2026
$2.6M
Deciphering Functional Consequences of Specific and Combinatorial Mutations in Protein Interaction NetworksR35GM137836 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SAHNI, NIDHI · 2020 to 2023
$1.8M
Regulation and interplay of Heat Shock Factors in growth-associated proteotoxic stressesR01GM144617 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Marc Mendillo · 2022 to 2026
$1.6M
Acquisition of a Thermo Fisher Scientific Q Exactive UHMR mass spectrometerS10OD025194 · OD · NORTHWESTERN UNIVERSITY · PI COMPTON, PHILIP DANIEL · 2018 to 2018
$795k
Elucidating the stress response regulatory networks that enable malignancyR00CA175293 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MENDILLO, MARC · 2016 to 2018
$747k
Elucidating the Role of C16orf72 in the Cellular Stress Response NetworkF30CA264513 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI AMICI, DAVID RUSSELL · 2021 to 2025
$222k
HSRD VA PPO 16-135NCI NIH HHS F30 CA264513NCI NIH HHS P30 CA060553NCI NIH HHS R00 CA175293NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R01 GM144617NIGMS NIH HHS R35 GM133658NIGMS NIH HHS R35 GM137836NIGMS NIH HHS T32 GM008152NIH HHS S10 OD025194
6 · The paper itself

Abstract

We recently identified HAPSTR1 (C16orf72) as a key component in a novel pathway which regulates the cellular response to molecular stressors, such as DNA damage, nutrient scarcity, and protein misfolding. Here, we identify a functional paralog to HAPSTR1: HAPSTR2. HAPSTR2 formed early in mammalian evolution, via genomic integration of a reverse transcribed HAPSTR1 transcript, and has since been preserved under purifying selection. HAPSTR2, expressed primarily in neural and germline tissues and a subset of cancers, retains established biochemical features of HAPSTR1 to achieve two functions. In normal physiology, HAPSTR2 directly interacts with HAPSTR1, markedly augmenting HAPSTR1 protein stability in a manner independent from HAPSTR1's canonical E3 ligase, HUWE1. Alternatively, in the context of HAPSTR1 loss, HAPSTR2 expression is sufficient to buffer stress signaling and resilience. Thus, we discover a mammalian retrogene which safeguards fitness.

Indexed as

Stress, PhysiologicalUbiquitin-Protein LigasesAnimalsDNA DamageIntracellular Signaling Peptides and ProteinsMammalsSignal TransductionHAPSTR1 protein, humanHAPSTR2 protein, humanIntracellular Signaling Peptides and ProteinsUbiquitin-Protein Ligases

Identifiers

PMID36631436
PMCPMC9834230

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.