Evidence map›Paper›PMID 36630960›Full record

ArticleStructure (London, England : 1993)2023

Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser.

Rebecca J Jernigan, Dhenugen Logeswaran, Diandra Doppler, Nirupa Nagaratnam, Mukul Sonker, Jay-How Yang, Gihan Ketawala, Jose M Martin-Garcia, Megan L Shelby, Thomas D Grant and 26 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Functional implications of hexameric dynamics in SARS-CoV-2 Nsp15.Protein science : a publication of the Protein Society · 2025
    Article
  4. Article
  5. Article
  6. TheJournal of applied crystallography · 2024
    Article
  7. Structure-based approaches against COVID-19.Journal of the Chinese Medical Association : JCMA · 2024
    Review
  8. X-Ray Crystallography of Viruses.Sub-cellular biochemistry · 2024
    Review
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 6 institutions in 2 countries.

Rebecca J JerniganBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Dhenugen LogeswaranSchool of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Diandra DopplerBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Nirupa NagaratnamBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Mukul SonkerBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Jay-How YangBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Gihan KetawalaBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Jose M Martin-GarciaBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Megan L ShelbyLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Thomas D GrantDepartment of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, SUNY University at Buffalo, 955 Main Street, Buffalo, NY 14203, USA.
Valerio MarianiLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Alexandra TolstikovaDeutsches Elektronen-Synchrotron, Notkestrasse 85, 22607 Hamburg, Germany.
Michelle Z SheikhBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Mimi Cho YungLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Matthew A ColemanLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Sahba ZaareBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; Fulton School of Electrical, Computer, and Energy Engineering, Arizona State University, Tempe, AZ 85287, USA; Department of Physics, Arizona State University, Tempe, AZ 85287-1504, USA.
Emily K KaschnerBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Mohammad Towshif RabbaniBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Reza NazariBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Michele A ZacksBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Brandon HayesLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Raymond G SierraLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Stella LisovaLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Alexander BatyukLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Christopher KupitzLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Sebastien BoutetLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Debra T HansenBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA.
Richard A KirianBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; Department of Physics, Arizona State University, Tempe, AZ 85287-1504, USA.
Marius SchmidtDepartment of Physics, University of Wisconsin-Milwaukee, 3135 N. Maryland Avenue, Milwaukee, WI 53211, USA.
Raimund FrommeBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Matthias FrankLawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550, USA.
Alexandra RosBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Julian J-L ChenSchool of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA.
Sabine BothaBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; Department of Physics, Arizona State University, Tempe, AZ 85287-1504, USA. Electronic address: sbotha@asu.edu.
Petra FrommeBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ 85287-5001, USA; School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA. Electronic address: pfromme@asu.edu.
Arizona State University · USSLAC National Accelerator Laboratory · USLawrence Livermore National Laboratory · USDeutsches Elektronen-Synchrotron DESY · DEUniversity at Buffalo, State University of New York · USUniversity of Wisconsin–Milwaukee · US

Funding

Technology development for biological imaging with x-ray free electron lasersR01GM117342 · NIGMS · LAWRENCE LIVERMORE NATIONAL SECURITY, LLC · PI FRANK, MATTHIAS · 2016 to 2024
$4.8M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Molecular Mechanism of Telomerase Action: Administrative SupplementR01GM094450 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CHEN, JULIAN J-L · 2011 to 2019
$2.9M
NIGMS NIH HHS R01 GM094450NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM117342
6 · The paper itself

Abstract

NendoU from SARS-CoV-2 is responsible for the virus's ability to evade the innate immune system by cleaving the polyuridine leader sequence of antisense viral RNA. Here we report the room-temperature structure of NendoU, solved by serial femtosecond crystallography at an X-ray free-electron laser to 2.6 Å resolution. The room-temperature structure provides insight into the flexibility, dynamics, and other intrinsic properties of NendoU, with indications that the enzyme functions as an allosteric switch. Functional studies examining cleavage specificity in solution and in crystals support the uridine-purine cleavage preference, and we demonstrate that enzyme activity is fully maintained in crystal form. Optimizing the purification of NendoU and identifying suitable crystallization conditions set the benchmark for future time-resolved serial femtosecond crystallography studies. This could advance the design of antivirals with higher efficacy in treating coronaviral infections, since drugs that block allosteric conformational changes are less prone to drug resistance.

Indexed as

COVID-19SARS-CoV-2Crystallography, X-RayElectronsEndoribonucleasesHumansLasersTemperatureViral Nonstructural ProteinsEndoribonucleasesnidoviral uridylate-specific endoribonucleaseViral Nonstructural ProteinsCOVID-19NendoUNSP15SARS-CoV-2serial femtosecond crystallographyX-ray free-electron laser

Identifiers

PMID36630960
PMCPMC9830665
OpenAlexW4314937960

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.