Evidence map›Paper›PMID 36630956›Full record

ArticleCell systems2023

Multi-omic integration reveals cell-type-specific regulatory networks of insulin resistance in distinct ancestry populations.

Peng Xu, Minghui Wang, Neeraj K Sharma, Mary E Comeau, Martin Wabitsch, Carl D Langefeld, Mete Civelek, Bin Zhang, Swapan K Das

Open access · greenAbstract read
In one paragraph

Article in Cell systems, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Metaboepigenetic regulation of gene expression in obesity and insulin resistance.Metabolomics : Official journal of the Metabolomic Society · 2024
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Peng XuDepartment of Genetics & Genomic Sciences, Mount Sinai Center for Transformative Disease Modeling, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Minghui WangDepartment of Genetics & Genomic Sciences, Mount Sinai Center for Transformative Disease Modeling, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Neeraj K SharmaDepartment of Internal Medicine, Section of Endocrinology and Metabolism, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Mary E ComeauDepartment of Biostatistics and Data Science, Division of Public Health Sciences, and Center for Precision Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Martin WabitschDivision of Pediatric Endocrinology and Diabetes, Department of Pediatrics and Adolescent Medicine, University Medical Center Ulm, Eythstr. 24, D-89075 Ulm, Germany.
Carl D LangefeldDepartment of Biostatistics and Data Science, Division of Public Health Sciences, and Center for Precision Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Mete CivelekCenter for Public Health Genomics, Department of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.
Bin ZhangDepartment of Genetics & Genomic Sciences, Mount Sinai Center for Transformative Disease Modeling, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: bin.zhang@mssm.edu.
Swapan K DasDepartment of Internal Medicine, Section of Endocrinology and Metabolism, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA. Electronic address: sdas@wakehealth.edu.
Wake Forest University · USIcahn School of Medicine at Mount Sinai · USUniversity of Virginia · US

Funding

Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
Integrative Network Biology Approaches to Identify, Characterize and Validate Molecular Subtypes in Alzheimer's DiseaseU01AG046170 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WANG, MINGHUI, ZHANG, BIN · 2013 to 2022
$26.0M
Mapping Diabetes Susceptibility by Expression Traits in African AmericansR01DK090111 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DAS, SWAPAN KUMAR · 2011 to 2015
$2.5M
The role of adipocyte KLF14 in Metabolic SyndromeR01DK118287 · NIDDK · UNIVERSITY OF VIRGINIA · PI CIVELEK, METE · 2018 to 2022
$2.4M
Identifying Genetic Drivers of Expression Networks Causing Insulin ResistanceR01DK118243 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DAS, SWAPAN KUMAR · 2018 to 2020
$1.1M
NCATS NIH HHS UL1 TR004419NIA NIH HHS U01 AG046170NIDDK NIH HHS R01 DK090111NIDDK NIH HHS R01 DK118243NIDDK NIH HHS R01 DK118287
6 · The paper itself

Abstract

Our knowledge of the cell-type-specific mechanisms of insulin resistance remains limited. To dissect the cell-type-specific molecular signatures of insulin resistance, we performed a multiscale gene network analysis of adipose and muscle tissues in African and European ancestry populations. In adipose tissues, a comparative analysis revealed ethnically conserved cell-type signatures and two adipocyte subtype-enriched modules with opposite insulin sensitivity responses. The modules enriched for adipose stem and progenitor cells as well as immune cells showed negative correlations with insulin sensitivity. In muscle tissues, the modules enriched for stem cells and fibro-adipogenic progenitors responded to insulin sensitivity oppositely. The adipocyte and muscle fiber-enriched modules shared cellular-respiration-related genes but had tissue-specific rearrangements of gene regulations in response to insulin sensitivity. Integration of the gene co-expression and causal networks further pinpointed key drivers of insulin resistance. Together, this study revealed the cell-type-specific transcriptomic networks and signaling maps underlying insulin resistance in major glucose-responsive tissues. A record of this paper's transparent peer review process is included in the supplemental information.

Indexed as

Insulin ResistanceGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHumansMultiomicsadiposeAfrican AmericaneQTLEuropean Americangene causal networkgene co-expression networkgene moduleinsulin resistancekey drivermuscle

Identifiers

PMID36630956
PMCPMC9852073
OpenAlexW4315490643

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.