Evidence map›Paper›PMID 36630917›Full record

ArticleImmunity2023

GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology.

Zachary M Earley, Wioletta Lisicka, Joseph J Sifakis, Raúl Aguirre-Gamboa, Anita Kowalczyk, Jacob T Barlow, Dustin G Shaw, Valentina Discepolo, Ineke L Tan, Saideep Gona and 9 more

Abstract read
In one paragraph

Article in Immunity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Regional organization of nutrient absorption across the small intestine.Nature reviews. Gastroenterology & hepatology · 2026
    Review
  2. Article
  3. Article
  4. Coincident epithelial signals restrain commensal-specific CD8αβbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Cellular and molecular basis of proximal small intestine disorders.Nature reviews. Gastroenterology & hepatology · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Zachary M EarleyCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA.
Wioletta LisickaCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA.
Joseph J SifakisDepartment of Chemistry, University of Chicago, Chicago, IL, USA.
Raúl Aguirre-GamboaDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Anita KowalczykDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Jacob T BarlowDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Dustin G ShawCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA.
Valentina DiscepoloDepartment of Medical Translational Sciences and European Laboratory for the Investigation of Food Induced Diseases, University of Federico II, Naples, Italy.
Ineke L TanDepartment of Gastroenterology and Hepatology, University of Groningen and University of Medical Center Groningen, Groningen, the Netherlands.
Saideep GonaGenetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA.
Jordan D ErnestDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Polly MatzingerGhost Lab, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Luis B BarreiroCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA.
Andrey MorgunCollege of Pharmacy, Oregon State University, Corvallis, OR, USA.
Albert BendelacCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Pathology, University of Chicago, Chicago, IL, USA.
Rustem F IsmagilovDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.
Natalia ShulzhenkoDepartment of Biomedical Sciences, Oregon State University, Corvallis, OR, USA.
Samantha J RiesenfeldCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA. Electronic address: sriesenfeld@uchicago.edu.
Bana JabriCommittee on Immunology, University of Chicago, Chicago, IL, USA; Department of Medicine, University of Chicago, Chicago, IL, USA; Department of Pathology, University of Chicago, Chicago, IL, USA; Department of Pediatrics, University of Chicago, Chicago, IL, USA. Electronic address: bjabri@bsd.uchicago.edu.

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007090 · NIAID · UNIVERSITY OF CHICAGO · PI Peter Aidan Savage · 1985 to 2026
$11.7M
The Danger Model 2: how tissues control ImmunityZIAAI000581 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MATZINGER, POLLY C · 2009 to 2025
$8.5M
Innate and adaptive immunity in celiac diseaseR01DK067180 · NIDDK · UNIVERSITY OF CHICAGO · PI JABRI, BANA · 2005 to 2024
$8.5M
Development of Intestinal Polyreactive IgA B CellsR01AI144094 · NIAID · UNIVERSITY OF CHICAGO · PI BENDELAC, ALBERT S. · 2019 to 2023
$2.5M
Specificity of Intestinal Immunoglobulin AU01AI125250 · NIAID · UNIVERSITY OF CHICAGO · PI BENDELAC, ALBERT S. · 2016 to 2020
$2.5M
Gut microbiota mediates the interplay between immunity and glucose metabolismR01DK103761 · NIDDK · OREGON STATE UNIVERSITY · PI SHULZHENKO, NATALIA · 2015 to 2019
$1.7M
Anti-IL-12p40 Treatment of CVID Enteropathy: Gene Expression/Microbiota AnalysisU01AI109695 · NIAID · OREGON STATE UNIVERSITY · PI MORGUN, ANDRIY · 2013 to 2015
$951k
NIAID NIH HHS R01 AI144094NIAID NIH HHS T32 AI007090NIAID NIH HHS U01 AI109695NIAID NIH HHS U01 AI125250NIDDK NIH HHS P30 DK042086NIDDK NIH HHS R01 DK067180NIDDK NIH HHS R01 DK103761NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

There is growing recognition that regionalization of bacterial colonization and immunity along the intestinal tract has an important role in health and disease. Yet, the mechanisms underlying intestinal regionalization and its dysregulation in disease are not well understood. This study found that regional epithelial expression of the transcription factor GATA4 controls bacterial colonization and inflammatory tissue immunity in the proximal small intestine by regulating retinol metabolism and luminal IgA. Furthermore, in mice without jejunal GATA4 expression, the commensal segmented filamentous bacteria promoted pathogenic inflammatory immune responses that disrupted barrier function and increased mortality upon Citrobacter rodentium infection. In celiac disease patients, low GATA4 expression was associated with metabolic alterations, mucosal Actinobacillus, and increased IL-17 immunity. Taken together, these results reveal broad impacts of GATA4-regulated intestinal regionalization on bacterial colonization and tissue immunity, highlighting an elaborate interdependence of intestinal metabolism, immunity, and microbiota in homeostasis and disease.

Indexed as

Enterobacteriaceae InfectionsGastrointestinal MicrobiomeGATA4 Transcription FactorIntestinal MucosaActinobacillusAnimalsHumansImmunity, MucosalInterleukin-17Intestine, SmallMiceSymbiosisGata4 protein, mouseGATA4 Transcription FactorInterleukin-17bacterial colonizationceliac diseaseGATA4IgAimmunopathologyinfectionintestinal epithelial cellsintestinal regionalizationretinoic acidsegmented filamentous bacteria

Identifiers

PMID36630917
PMCPMC10262782

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.