Evidence map›Paper›PMID 36629315›Full record

ArticleeLife2023

MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size.

Michael J Lafferty, Nil Aygün, Niyanta K Patel, Oleh Krupa, Dan Liang, Justin M Wolter, Daniel H Geschwind, Luis de la Torre-Ubieta, Jason L Stein

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Michael J LaffertyDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.ORCID 0000-0002-1000-0480
Nil AygünDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Niyanta K PatelDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Oleh KrupaDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Dan LiangDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Justin M WolterDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.
Daniel H GeschwindNeurogenetics Program, Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States.ORCID 0000-0003-2896-3450
Luis de la Torre-UbietaDepartment of Psychiatry and Biobehavioral Sciences, Semel Institute, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States.
Jason L SteinDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States.ORCID 0000-0003-4829-0513
University of North Carolina at Chapel Hill · USUniversity of California, Los Angeles · US

Funding

Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZACK, JEROME A. · 1991 to 2018
$39.9M
Training U54EB020403 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2014 to 2018
$10.1M
Preclinical CoreP50HD103573 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GABRIEL S DICHTER · 2020 to 2026
$9.7M
Postdoctoral Research in Neurodevelopmental DisordersT32HD040127 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BENJAMIN D PHILPOT, Mark D Shen · 2001 to 2026
$8.5M
Preclinical CoreU54HD079124 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, YUN · 2013 to 2019
$8.0M
The influence of common genetic variation on brain overgrowth pathwaysR01MH120125 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STEIN, JASON LOUIS · 2019 to 2023
$2.5M
UNC Predoc Training Progr in Bioinformatics/Comp BiologyT32GM067553 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C · 2005 to 2019
$2.5M
pathQTL: Integrative Multi-Omics Causal Inference of Molecular Mechanisms Leading to Neuropsychiatric IllnessR01MH118349 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LOVE, MICHAEL ISAIAH, STEIN, JASON LOUIS · 2019 to 2023
$2.4M
Genetic Influences on Human Cortical DevelopmentR00MH102357 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STEIN, JASON LOUIS · 2016 to 2018
$747k
NIAID NIH HHS P30 AI028697NIBIB NIH HHS U54 EB020403NICHD NIH HHS P50 HD103573NICHD NIH HHS T32 HD040127NICHD NIH HHS U54 HD079124NIGMS NIH HHS 5T32GM067553-13NIGMS NIH HHS T32 GM067553NIH HHS R00MH102357NIH HHS R01MH118349NIH HHS R01MH120125NIH HHS R01MH120125,R01MH118349,U54EB020403,R00MH102357NIH HHS U54EB020403NIMH NIH HHS R00 MH102357NIMH NIH HHS R01 MH118349NIMH NIH HHS R01 MH120125
6 · The paper itself

Abstract

Expression quantitative trait loci (eQTL) data have proven important for linking non-coding loci to protein-coding genes. But eQTL studies rarely measure microRNAs (miRNAs), small non-coding RNAs known to play a role in human brain development and neurogenesis. Here, we performed small-RNA sequencing across 212 mid-gestation human neocortical tissue samples, measured 907 expressed miRNAs, discovering 111 of which were novel, and identified 85 local-miRNA-eQTLs. Colocalization of miRNA-eQTLs with GWAS summary statistics yielded one robust colocalization of miR-4707-3p expression with educational attainment and brain size phenotypes, where the miRNA expression increasing allele was associated with decreased brain size. Exogenous expression of miR-4707-3p in primary human neural progenitor cells decreased expression of predicted targets and increased cell proliferation, indicating miR-4707-3p modulates progenitor gene regulation and cell fate decisions. Integrating miRNA-eQTLs with existing GWAS yielded evidence of a miRNA that may influence human brain size and function via modulation of neocortical brain development.

Indexed as

MicroRNAsNeocortexNeurogenesisGene Expression ProfilingGene Expression RegulationHumansOrgan SizePhenotypeQuantitative Trait LociRNA, Long NoncodingMicroRNAsMIRN-4707 microRNA, humanRNA, Long NoncodingeQTLgeneticsgenomicshumanmiRNAneurogenesisneuroscience

Identifiers

PMID36629315
PMCPMC9859047
OpenAlexW4315620811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.