Evidence map›Paper›PMID 36627705›Full record

ArticleJournal of translational medicine2023

Multi-omics characterization of a scoring system to quantify hypoxia patterns in patients with head and neck squamous cell carcinoma.

Cong Peng, Huiping Ye, Zhengyang Li, Xiaofeng Duan, Wen Yang, Zhuguang Yi

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Type I conventional dendritic cells and CD8Frontiers in immunology · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Cong PengDepartment of Otolaryngology, Guizhou Provincial People's Hospital, Guiyang, China.
Huiping YeDepartment of Otolaryngology, Guizhou Provincial People's Hospital, Guiyang, China. yehuiping888@aliyun.com.ORCID 0000-0002-0882-8254
Zhengyang LiDepartment of Otolaryngology, Guizhou Provincial People's Hospital, Guiyang, China.
Xiaofeng DuanDepartment of Oral and Maxillofacial Surgery, Guizhou Provincial People's Hospital, Guiyang, China.
Wen YangDepartment of Pathology, Affiliated Hospital of Guizhou Medical University, Guiyang, China.
Zhuguang YiDepartment of Otolaryngology, Guizhou Provincial People's Hospital, Guiyang, China.
Guizhou Provincial People's Hospital · CNGuiyang Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe 5-year survival rate of patients with head and neck squamous cell carcinoma (HNSCC) remains  < 50%. Hypoxia patterns are a hallmark of HNSCC that are associated with its occurrence and progression. However, the precise role of hypoxia during HNSCC, such as the relationship between hypoxia, tumor immune landscape and cell communication orchestration remains largely unknown. The current study integrated data from bulk and single-cell RNA sequencing analyses to define the relationship between hypoxia and HNSCC.

methodsA scoring system named the hypoxia score (HS) was constructed based on hypoxia-related genes (HRGs) expression. The predictive value of HS response for patient outcomes and different treatments was evaluated. Single-cell datasets and cell communication were utilized to rule out cell populations which hypoxia targeted on.

resultsThe survival outcomes, immune/Estimate scores, responses to targeted inhibitors, and chemotherapeutic, and immunotherapy responses were distinct between a high HS group and a low HS group (all P < 0.05). Single-cell datasets showed different distributions of HS in immune cell populations (P < 0.05). Furthermore, HLA-DPA1/CD4 axis was identified as a unique interaction between CD4 + T Conv and pDC cells.

conclusionsAltogether, the quantification for hypoxia patterns is a potential biomarker for prognosis, individualized chemotherapeutic and immunotherapy strategies. The portrait of cell communication characteristics over the HNSCC ecosystem enhances the understanding of hypoxia patterns in HNSCC.

Indexed as

Head and Neck NeoplasmsSquamous Cell Carcinoma of Head and NeckTumor HypoxiaBiomarkers, TumorHumansMultiomicsPrognosisBiomarkers, TumorCellchatCrosstalkHead and neck squamous cell carcinomaHypoxiaSingle-cell

Identifiers

PMID36627705
PMCPMC9830846
OpenAlexW4313909332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.