Evidence map›Paper›PMID 36627660›Full record

ArticleJournal of orthopaedic surgery and research2023

IRF8 and its related molecules as potential diagnostic biomarkers or therapeutic candidates and immune cell infiltration characteristics in steroid-induced osteonecrosis of the femoral head.

Xue-Zhen Liang, Xiao-Chen Liu, Song Li, Ming-Tao Wen, Yan-Rong Chen, Di Luo, Bo Xu, Nian-Hu Li, Gang Li

Open access · goldAbstract read
In one paragraph

Article in Journal of orthopaedic surgery and research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

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  10. Potential of Gut Microbial Metabolites in Treating Osteoporosis and Obesity: A Network Pharmacology and Bioinformatics Approach.Medical science monitor : international medical journal of experimental and clinical research · 2024
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  11. Article
  12. [Role and mechanism of macrophage-mediated osteoimmune in osteonecrosis of the femoral head].Zhongguo xiu fu chong jian wai ke za zhi = Zhongguo xiufu chongjian waike zazhi = Chinese journal of reparative and reconstructive surgery · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xue-Zhen Liang *Orthopaedic Microsurgery, Affiliated Hospital of Shandong University of Traditional Chinese Medicine, 16369 Jingshi Road, Jinan City, 250014, Shandong Province, China.
Xiao-Chen Liu *Orthopaedic Microsurgery, Affiliated Hospital of Shandong University of Traditional Chinese Medicine, 16369 Jingshi Road, Jinan City, 250014, Shandong Province, China.
Song LiLibrary, Shandong University of Traditional Chinese Medicine, Jinan, 250355, Shandong, China.
Ming-Tao WenThe First Clinical Medical School, Shandong University of Traditional Chinese Medicine, Jinan, 250355, Shandong, China.
Yan-Rong ChenOrthopaedic Microsurgery, Affiliated Hospital of Shandong University of Traditional Chinese Medicine, 16369 Jingshi Road, Jinan City, 250014, Shandong Province, China.
Di LuoOrthopaedic Microsurgery, Affiliated Hospital of Shandong University of Traditional Chinese Medicine, 16369 Jingshi Road, Jinan City, 250014, Shandong Province, China.
Bo XuThe First Clinical Medical School, Shandong University of Traditional Chinese Medicine, Jinan, 250355, Shandong, China.
Nian-Hu LiThe First Clinical Medical School, Shandong University of Traditional Chinese Medicine, Jinan, 250355, Shandong, China. tigerlee073@126.com.
Gang LiOrthopaedic Microsurgery, Affiliated Hospital of Shandong University of Traditional Chinese Medicine, 16369 Jingshi Road, Jinan City, 250014, Shandong Province, China. sdszylg@163.com.ORCID http://orcid.org/0000-0002-4587-6650
Shandong University of Traditional Chinese Medicine · CNAffiliated Hospital of Shandong University of Traditional Chinese Medicine · CN

Funding

Development Plan of Shandong Medical and Health Technology No. 2019WS577Development Plan of Shandong Traditional Chinese Medicine Science and Technology No. 2020Q009Innovation Program of Jinan Clinical Medicine Science and Technology No.202019056National Natural Science Foundation of China No. 81774333National Natural Science Foundation of China No. 82074453National Natural Science Foundation of Shandong Province No. ZR2021QH004
6 · The paper itself

Abstract

purposeSteroid-induced osteonecrosis of the femoral head (SONFH) was a refractory orthopedic hip joint disease in the young and middle-aged people, but the pathogenesis of SONFH remained unclear. We aimed to identify the potential genes and screen potential therapeutic compounds for SONFH.

methodsThe microarray was obtained for blood tissue from the GEO database, and then it identifies differentially expressed genes (DEGs). The DEGs were analyzed to obtain the differences in immune cell infiltration. The gene functional enrichment analysis of SONFH was analyzed. The PPI of DEGs was identified through the STRING database, and the cluster modules and hub genes were ascertained using MCODE and CytoHubba, and the ROC curve of hub genes was analyzed, and the tissues distribution of hub genes was understood by the HPA, Bgee and BioGPS databases. The hub genes and target miRNAs and corresponding upstream lncRNAs were predicted by TargetScan, miRDB and ENCORI database. Subsequently, we used CMap, DGIdb and L1000FWD databases to identify several potential therapeutic molecular compounds for SONFH. Finally, the AutoDockTools Vina, PyMOL and Discovery Studio were employed for molecular docking analyses between compounds and hub genes.

resultsThe microarray dataset GSE123568 was obtained related to SONFH. There were 372 DEGs including 197 upregulated genes and 175 downregulated genes by adjusted P value < 0.01 and |log

conclusionThe occurrence of SONFH was associated with a "multi-target" and "multi-pathway" pattern, especially related to immunity, and IRF8 and its noncoding RNA were closely related to the development of SONFH. The CMap, DGIdb and L1000FWD databases could be effectively used in a systematic manner to predict potential drugs for the prevention and treatment of SONFH. However, additional clinical and experimental research is warranted.

Indexed as

MicroRNAsOsteonecrosisRNA, Long NoncodingBiomarkersFemur HeadGene Expression ProfilingHumansInterferon Regulatory FactorsMolecular Docking SimulationSteroidsBiomarkersInterferon Regulatory FactorsMicroRNAsRNA, Long NoncodingSteroidsCompeting endogenous RNAConnectivity map databaseDrug gene interaction databaseImmune cell infiltrationL1000 fireworks display databaseMolecular dockingNoncoding RNASteroid-induced osteonecrosis of the femoral head

Identifiers

PMID36627660
PMCPMC9832881
OpenAlexW4315491370

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.