Evidence map›Paper›PMID 36627558›Full record

ArticleBMC plant biology2023

The revealing of a novel lipid transfer protein lineage in green algae.

Ming-Der Huang, Chin-Wei Wu, Hong-Yun Chou, Sou-Yu Cheng, Hsin-Yang Chang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ming-Der HuangDepartment of Biological Sciences, National Sun Yat-sen University, Kaohsiung, Taiwan, 80424. mdhuang@mail.nsysu.edu.tw.
Chin-Wei WuDepartment of Biological Sciences, National Sun Yat-sen University, Kaohsiung, Taiwan, 80424.
Hong-Yun ChouDepartment of Marine Biotechnology and Resources, National Sun Yat-sen University, Kaohsiung, Taiwan, 80424.
Sou-Yu ChengDepartment of Biological Sciences, National Sun Yat-sen University, Kaohsiung, Taiwan, 80424.
Hsin-Yang ChangDepartment of Marine Biotechnology and Resources, National Sun Yat-sen University, Kaohsiung, Taiwan, 80424. hychang5@nycu.edu.tw.
National Sun Yat-sen University · TW

Funding

Ministry of Science and Technology, Taiwan MOST 107-2311-B-110-004Ministry of Science and Technology, Taiwan MOST 109-2311-B-010-007-MY3
6 · The paper itself

Abstract

backgroundNon-specific lipid transfer proteins (nsLTPs) are a group of small and basic proteins that can bind and transfer various lipid molecules to the apoplastic space. A typical nsLTP carries a conserved architecture termed eight-cysteine motif (8CM), a scaffold of loop-linked helices folding into a hydrophobic cavity for lipids binding. Encoded by a multigene family, nsLTPs are widely distributed in terrestrial plants from bryophytes to angiosperms with dozens of gene members in a single species. Although the nsLTPs in the most primitive plants such as Marchantia already reach 14 members and are divergent enough to form separate groups, so far none have been identified in any species of green algae.

resultsBy using a refined searching strategy, we identified putative nsLTP genes in more than ten species of green algae as one or two genes per haploid genome but not in red and brown algae. The analyses show that the algal nsLTPs carry unique characteristics, including the extended 8CM spacing, larger molecular mass, lower pI value and multiple introns in a gene, which suggests that they could be a novel nsLTP lineage. Moreover, the results of further investigation on the two Chlamydomonas nsLTPs using transcript and protein assays demonstrated their late zygotic stage expression patterns and the canonical nsLTP properties were also verified, such as the fatty acids binding and proteinase resistance activities.

conclusionsIn conclusion, a novel nsLTP lineage is identified in green algae, which carries some unique sequences and molecular features that are distinguishable from those in land plants. Combined with the results of further examinations of the Chlamydomonas nsLTPs in vitro, possible roles of the algal nsLTPs are also suggested. This study not only reveals the existence of the nsLTPs in green algae but also contributes to facilitating future studies on this enigmatic protein family.

Indexed as

ChlorophytaPlant ProteinsCarrier ProteinsFatty AcidsPhylogenyPlantsCarrier ProteinsFatty Acidslipid transfer proteinPlant ProteinsChlamydomonasGreen algaeNon-specific lipid transfer proteinZygotes

Identifiers

PMID36627558
PMCPMC9832785
OpenAlexW4315465127

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.