Evidence map›Paper›PMID 36626587›Full record

ArticleJournal of the American Chemical Society2023

Engineered PROTAC-CID Systems for Mammalian Inducible Gene Regulation.

Dacheng Ma, Qichen Yuan, Fei Peng, Victor Paredes, Hongzhi Zeng, Emmanuel C Osikpa, Qiaochu Yang, Advaith Peddi, Anika Patel, Megan S Liu and 2 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Dacheng MaDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.ORCID 0000-0002-2048-4300
Qichen YuanDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Fei PengDepartment of Medicine, Division of Diabetes, Endocrinology and Metabolism, Baylor College of Medicine, Houston, Texas77030, United States.
Victor ParedesDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Hongzhi ZengDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Emmanuel C OsikpaDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Qiaochu YangDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Advaith PeddiDepartment of Biosciences, Rice University, Houston, Texas77005, United States.ORCID 0000-0002-1604-4206
Anika PatelDepartment of Computer Sciences, Rice University, Houston, Texas77005, United States.
Megan S LiuDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.
Zheng SunDepartment of Medicine, Division of Diabetes, Endocrinology and Metabolism, Baylor College of Medicine, Houston, Texas77030, United States.
Xue GaoDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, Texas77005, United States.ORCID 0000-0003-3213-9704

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Tissue ResourceP50CA126752 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Leonid S Metelitsa · 2007 to 2026
$51.4M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Casey W Wright · 2019 to 2026
$14.7M
Gender-Specific Effects of Arsenic in DiabetesR01ES027544 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2017 to 2021
$2.2M
Develop High-Precision and Multiplex Base Editing Approaches for Therapeutic ApplicationsR01HL157714 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI GAO, XUE · 2021 to 2024
$2.0M
Epigenomic Remodeling of Metabolism by Exercise through AP-1R01DK111436 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2017 to 2020
$2.0M
Cardiac Circadian Clock and Dilated CardiomyopathyR01HL153320 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2020 to 2023
$1.9M
Circadian clock gene Rev-erb in memory dysfunction in Alzheimer's diseaseRF1AG069966 · NIA · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2021 to 2021
$1.8M
Circadian clock gene Rev-erb in memory dysfunction in Alzheimer's diseaseR01AG069966 · NIA · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2024 to 2025
$1.1M
NCI NIH HHS P30 CA125123NCI NIH HHS P50 CA126752NHLBI NIH HHS R01 HL153320NHLBI NIH HHS R01 HL157714NIA NIH HHS R01 AG069966NIA NIH HHS RF1 AG069966NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK111436NIEHS NIH HHS P30 ES030285NIEHS NIH HHS R01 ES027544
6 · The paper itself

Abstract

Gene regulation via chemically induced dimerization (CID) is useful for biomedical research. However, the number, type, versatility, and in vivo applications of CID tools remain limited. Here, we demonstrate the development of proteolysis-targeting chimera-based scalable CID (PROTAC-CID) platforms by systematically engineering the available PROTAC systems for inducible gene regulation and gene editing. Further, we show orthogonal PROTAC-CIDs that can fine-tune gene expression at gradient levels or multiplex biological signals with different logic gating operations. Coupling the PROTAC-CID platform with genetic circuits, we achieve digitally inducible expression of DNA recombinases, base- and prime-editors for transient genome manipulation. Finally, we package a compact PROTAC-CID system into adeno-associated viral vectors for inducible and reversible gene activation in vivo. This work provides a versatile molecular toolbox that expands the scope of chemically inducible gene regulation in human cells and mice.

Indexed as

DNARecombinasesAnimalsCRISPR-Cas SystemsDimerizationGene EditingGenomeHumansMammalsMiceDNARecombinases

Identifiers

PMID36626587
PMCPMC10162582

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.