Evidence map›Paper›PMID 36624666›Full record

ArticleNucleic acids research2023

Pharos 2023: an integrated resource for the understudied human proteome.

Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 74 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. The evolving landscape of drug targets.Nature reviews. Drug discovery · 2026
    Review
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  11. Genetic and Proteomic Investigation of the Smoking-Parkinson's Disease Association.medRxiv : the preprint server for health sciences · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Single-CellInternational journal of molecular sciences · 2026
    Article
  16. Article
  17. Article
  18. The oncogenome of the domestic cat.Science (New York, N.Y.) · 2026
    Article
  19. Article
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Keith J KelleherNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0002-8878-1539
Timothy K SheilsNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0002-9987-3738
Stephen L MathiasTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0002-7255-370X
Jeremy J YangTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0002-1476-6192
Vincent T MetzgerTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0002-8041-0370
Vishal B SiramshettyNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0002-5980-8288
Dac-Trung NguyenNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0003-2591-9948
Lars Juhl JensenNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen 2200, Copenhagen, Denmark.ORCID 0000-0001-7885-715X
Dušica VidovićInstitute for Data Science and Computing, University of Miami, Coral Gables, FL 33146, USA.ORCID 0000-0001-9798-2108
Stephan C SchürerInstitute for Data Science and Computing, University of Miami, Coral Gables, FL 33146, USA.ORCID 0000-0001-7180-0978
Jayme HolmesTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0003-3109-5228
Karlie R SharmaNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0003-3435-7721
Ajay PillaiNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0002-9789-7189
Cristian G BologaTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0003-2232-4244
Jeremy S EdwardsTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0003-3694-3716
Ewy A MathéNational Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.ORCID 0000-0003-4491-8107
Tudor I OpreaTranslational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.ORCID 0000-0002-6195-6976

Funding

Knowledge Management Center for Illuminating the Druggable GenomeZIATR000057 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MATHÉ, EWY · 2015 to 2024
$12.6M
Machine Learning Model Validation for AD/ADRDU24CA224370 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI EDWARDS, JEREMY S · 2018 to 2023
$6.4M
Resource Dissemination and Outreach Center for Illuminating the Druggable GenomeU24TR002278 · NCATS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SCHURER, STEPHAN C, SKLAR, LARRY A. · 2018 to 2023
$3.7M
Intramural NIH HHS ZIA TR000057NCATS NIH HHS U24 TR002278NCI NIH HHS U24 CA224370
6 · The paper itself

Abstract

The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort are the Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/), which curates and aggregates information, and Pharos (https://pharos.nih.gov/), a web interface for fusers to extract and visualize data from TCRD. Since the 2021 release, TCRD/Pharos has focused on developing visualization and analysis tools that help reveal higher-level patterns in the underlying data. The current iterations of TCRD and Pharos enable users to perform enrichment calculations based on subsets of targets, diseases, or ligands and to create interactive heat maps and UpSet charts of many types of annotations. Using several examples, we show how to address disease biology and drug discovery questions through enrichment calculations and UpSet charts.

Indexed as

Databases, FactualMolecular Targeted TherapyProteomeBiological ProductsDrug DiscoveryHumansInternetBiological ProductsProteome

Identifiers

PMID36624666
PMCPMC9825581

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.