Evidence map›Paper›PMID 36624148›Full record

ArticleNature biotechnology2023

Unidirectional single-file transport of full-length proteins through a nanopore.

Luning Yu, Xinqi Kang, Fanjun Li, Behzad Mehrafrooz, Amr Makhamreh, Ali Fallahi, Joshua C Foster, Aleksei Aksimentiev, Min Chen, Meni Wanunu

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 122 citations in OpenAlex.

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  14. In situ and real-time monitoring of intracellular activities in single live cells using a nanopore probe.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Article
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  17. Review
  18. Proteoforms as the true units of physiological function.European journal of applied physiology · 2026
    Review
  19. Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Luning YuDepartment of Physics, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7947-1440
Xinqi KangDepartment of Bioengineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6762-9810
Fanjun LiDepartment of Chemistry, University of Massachusetts at Amherst, Amherst, MA, USA.
Behzad MehrafroozCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0000-0002-3788-8918
Amr MakhamrehDepartment of Bioengineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4615-5820
Ali FallahiDepartment of Bioengineering, Northeastern University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6854-6961
Joshua C FosterMolecular and Cellular Biology Program, University of Massachusetts at Amherst, Amherst, MA, USA.ORCID http://orcid.org/0000-0002-2086-2332
Aleksei AksimentievCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0000-0002-6042-8442
Min ChenDepartment of Chemistry, University of Massachusetts at Amherst, Amherst, MA, USA.ORCID http://orcid.org/0000-0002-7572-0761
Meni WanunuDepartment of Physics, Northeastern University, Boston, MA, USA. wanunu@neu.edu.ORCID http://orcid.org/0000-0002-9837-0004
Northeastern University · USUniversity of Illinois Urbana-Champaign · US

Funding

Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptasesR01HG011087 · NHGRI · NORTHEASTERN UNIVERSITY · PI WANUNU, MENI · 2020 to 2023
$3.0M
OmpG nanopore for single molecule protein sensingR01GM115442 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHEN, MIN · 2016 to 2020
$1.5M
NHGRI NIH HHS R01 HG011087NIGMS NIH HHS R01 GM115442
6 · The paper itself

Abstract

The electrical current blockade of a peptide or protein threading through a nanopore can be used as a fingerprint of the molecule in biosensor applications. However, threading of full-length proteins has only been achieved using enzymatic unfolding and translocation. Here we describe an enzyme-free approach for unidirectional, slow transport of full-length proteins through nanopores. We show that the combination of a chemically resistant biological nanopore, α-hemolysin (narrowest part is ~1.4 nm in diameter), and a high concentration guanidinium chloride buffer enables unidirectional, single-file protein transport propelled by an electroosmotic effect. We show that the mean protein translocation velocity depends linearly on the applied voltage and translocation times depend linearly on length, resembling the translocation dynamics of ssDNA. Using a supervised machine-learning classifier, we demonstrate that single-translocation events contain sufficient information to distinguish their threading orientation and identity with accuracies larger than 90%. Capture rates of protein are increased substantially when either a genetically encoded charged peptide tail or a DNA tag is added to a protein.

Indexed as

NanoporesDNA, Single-StrandedHemolysin ProteinsPeptidesProtein TransportDNA, Single-StrandedHemolysin ProteinsPeptides

Identifiers

PMID36624148
PMCPMC10329728
OpenAlexW4313830569

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.