Evidence map›Paper›PMID 36622281›Full record

ArticleAging2023

Single-cell transcriptomics of peripheral blood in the aging mouse.

Yee Voan Teo, Samuel J Hinthorn, Ashley E Webb, Nicola Neretti

Abstract read
In one paragraph

Article in Aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  16. Article
  17. Proteostasis in T cell aging.Seminars in immunology · 2023
    Review
  18. Intragraft B cell differentiation during the development of tolerance to kidney allografts is associated with a regulatory B cell signature revealed by single cell transcriptomics.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  19. Heterogeneity of memory T cells in aging.Frontiers in immunology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yee Voan TeoDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI 02903, USA.
Samuel J HinthornCenter for Computational Molecular Biology, Brown University, Providence, RI 02912, USA.
Ashley E WebbDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI 02903, USA.
Nicola NerettiDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI 02903, USA.

Funding

The role of Sirtuins in neurodegenerative diseaseP20GM109035 · NIGMS · BROWN UNIVERSITY · PI WONG, IAN Y · 2016 to 2025
$22.6M
The Role of Somatic Transposition in Age-associated Genomic InstabilityR01AG050582 · NIA · BROWN UNIVERSITY · PI NERETTI, NICOLA, SEDIVY, JOHN M · 2017 to 2022
$2.2M
Predoctoral Training Program in Biological Data Science at Brown UniversityT32GM128596 · NIGMS · BROWN UNIVERSITY · PI RAMACHANDRAN, SOHINI, SANDSTEDE, BJORN · 2018 to 2022
$1.5M
Spatial omics technologies to map the senescent cell microenvironmentUG3CA268202 · NCI · BROWN UNIVERSITY · PI MA, JIAN, NERETTI, NICOLA · 2021 to 2022
$916k
NCI NIH HHS UG3 CA268202NIA NIH HHS R01 AG050582NIGMS NIH HHS P20 GM109035NIGMS NIH HHS T32 GM128596
6 · The paper itself

Abstract

Compositional and transcriptional changes in the hematopoietic system have been used as biomarkers of immunosenescence and aging. Here, we use single-cell RNA-sequencing to study the aging peripheral blood in mice and characterize the changes in cell-type composition and transcriptional profiles associated with age. We identified 17 clusters from a total of 14,588 single cells. We detected a general upregulation of antigen processing and presentation and chemokine signaling pathways and a downregulation of genes involved in ribosome pathways with age. In old peripheral blood, we also observed an increased percentage of cells expressing senescence markers (Cdkn1a, and Cdkn2a). In addition, we detected a cluster of activated T cells exclusively found in old blood, with lower expression of Cd28 and higher expression of Bcl2 and Cdkn2a, suggesting that the cells are senescent and resistant to apoptosis.

Indexed as

Cellular SenescenceImmunosenescenceAgingAnimalsGene Expression ProfilingMiceTranscriptomeagingperipheral bloodsenescencesingle-cell transcriptomics

Identifiers

PMID36622281
PMCPMC9876630

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.