Evidence map›Paper›PMID 36620510›Full record

ArticleHealth science reports2023

Coinfections with SARS-CoV-2 variants and influenza virus during the 2019 Coronavirus disease pandemic in Burkina Faso: A surveillance study.

Moussa Lingani, Assana Cissé, Dieudonné Tialla, Abdoul Kader Ilboudo, Madi Savadogo, Catherine Sawadogo, Sandrine Gampini, Grissoum Tarnagda, Maria Tao, Serge Diagbouga and 2 more

Open access · goldAbstract read
In one paragraph

Article in Health science reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Is there Co-infection of Influenza and Covid-19 in Jos, North Central Nigeria?Nigerian medical journal : journal of the Nigeria Medical Association
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Moussa LinganiNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.ORCID 0000-0002-5651-2035
Assana CisséNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Dieudonné TiallaNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Abdoul Kader IlboudoNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Madi SavadogoNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Catherine SawadogoNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Sandrine GampiniNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Grissoum TarnagdaNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Maria TaoNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Serge DiagbougaNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Sanata BambaInstitut Supérieur des Sciences de la Santé, Université Nazi BONI, Bobo-Dioulasso Burkina Faso.
Zekiba TarnagdaNational Influenza Reference Laboratory Unité des Maladies à Potentiel Epidémique, Maladies Emergentes et Zoonoses, Institut de Recherche en Sciences de la Santé Nanoro Burkina Faso.
Institut de Recherche en Sciences de la Santé · BFNazi Boni University · BF

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aim: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) particularly the variants of concern coinfections with influenza is a public health concern in Africa. We aimed to characterize the SARS-CoV-2 variants and determine the rate of coinfections with influenza in Burkina Faso. Methods: COVID-19 surveillance study was conducted between August 2021 and January 2022 using reverse transcription polymerase chain reaction (RT-PCR). Positive specimens were further screened for SARS-CoV-2 variants using the multiple variants real-time PCR kits. In addition, influenza virus strains were detected by RT-PCR in SARS-CoV-2 positive specimens using the CDC primers, probes, and protocols. Results: Of 324 specimens assessed, the Omicron and Delta variants of SARS-CoV-2 were the most prevalent with 27.2% [95% confident interval (CI): 22.5-32.4] and 22.2% [95% CI: 17.9-27.2], respectively. The Beta and Gamma variants were detected in 4.3% [95% CI: 2.4-7.1] and 0.3% [95% CI: 0.0-1.7], respectively. Coinfections of Omicron and Beta variants were reported in 21.3% [95% CI: 17.0-26.2], Omicron and Delta variants in 1.2% [95% CI: 0.3-3.1] of specimens, and the Omicron-Gamma variants' coinfections in 0.6% [95% CI: 0.1-2.2]. One COVID-19 specimen with an undetected SARS-CoV-2 variant was also tested positive for the seasonal influenza A (H Conclusions: The current World Health Organization SARS-CoV-2 variants of concern were prevalent and their coinfections with influenza were uncommon. Continuous surveillance of both pathogens is, however, needed because of their public health implications.

Indexed as

Burkina FasoCOVID‐19influenzamutationSARS‐CoV‐2variant

Identifiers

PMID36620510
PMCPMC9811340
OpenAlexW4313596375

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.