Evidence map›Paper›PMID 36618978›Full record

ArticleComputational and structural biotechnology journal2023

Reference-based read clustering improves the

Mikang Sim, Jongin Lee, Daehong Kwon, Daehwan Lee, Nayoung Park, Suyeon Wy, Younhee Ko, Jaebum Kim

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Computational and structural biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mikang SimDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Jongin LeeDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Daehong KwonDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Daehwan LeeDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Nayoung ParkDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Suyeon WyDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.
Younhee KoDivision of Biomedical Engineering, Hankuk University of Foreign Studies, Gyeonggi-do 17035, Republic of Korea.
Jaebum KimDepartment of Biomedical Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Constructing accurate microbial genome assemblies is necessary to understand genetic diversity in microbial genomes and its functional consequences. However, it still remains as a challenging task especially when only short-read sequencing technologies are used. Here, we present a new read-clustering algorithm, called RBRC, for improving

Indexed as

Genome assemblyMicrobial genomeNext-generation sequencingRead clusteringReference-based

Identifiers

PMID36618978
PMCPMC9804104

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.