ArticlePlants (Basel, Switzerland)2023
Genome-Wide Association Study of Arabinoxylan Content from a 562 Hexaploid Wheat Collection.
Article in Plants (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed, 9 citations in OpenAlex.
- GWAS and genomic prediction for resistance to soybean mosaic virus strain SC7.BMC plant biology · 2026Article
- Genome-wide association analysis of fiber-related traits and identification of diagnostic SNP markers differentiating spelt wheat (Frontiers in plant science · 2026Article
- A genome-wide association study of arabinoxylan content in flour of triticale (×Frontiers in plant science · 2026Article
- Identification of TaqW-6AS, a novel gene controlling WE-AX content in wheat grain.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-wide association study to identify the genomic loci associated with wheat heading date variation under autumn-sowing conditions.PloS one · 2025Article
- Genome-wide association study and linkage mapping reveal TaqW-6B associated with water-extractable arabinoxylan content in wheat grain.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genetic analysis of iron, zinc and grain yield in wheat-Aegilops derivatives using multi-locus GWAS.Molecular biology reports · 2023Article
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Authors and funding
10 authors at 1 institution in 1 country.
Funding
Abstract
The selection of wheat varieties with high arabinoxylan (AX) levels could effectively improve the daily consumption of dietary fiber. However, studies on the selection of markers for AX levels are scarce. This study analyzed AX levels in 562 wheat genotypes collected from 46 countries using a GWAS with the BLINK model in the GAPIT3. Wheat genotypes were classified into eight subpopulations that exhibited high genetic differentiation based on 31,926 SNP loci. Eight candidate genes were identified, among which those encoding F-box domain-containing proteins, disease resistance protein RPM1, and bZIP transcription factor 29 highly correlated with AX levels. The AX level was higher in the adenine allele than in the guanine alleles of these genes in the wheat collection. In addition, the AX level was approximately 10% higher in 3 adenine combinations than 2 guanine, 1 adenine, and 3 guanine combinations in genotypes of three genes (F-box domain-containing proteins, RPM1, and bZIP transcription factor 29). The adenine allele, present in 97.46% of AX-95086356 SNP, exhibited a high correlation with AX levels following classification by country. Notably, the East Asian wheat genotypes contain high adenine alleles in three genes. These results highlight the potential of these three SNPs to serve as selectable markers for high AX content.
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Registered trials
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