Evidence map›Paper›PMID 36614092›Full record

ArticleInternational journal of molecular sciences2022

Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.

Tong Zhang, Weiqing Xing, Aoming Wang, Na Zhang, Ling Jia, Sanyuan Ma, Qingyou Xia

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Overview of Ferroptosis in Cadmium Toxicity.Biological trace element research · 2026
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  6. Review
  7. Review
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  9. The T2T Genome of the Domesticated SilkwormInternational journal of molecular sciences · 2024
    Article
  10. Review
  11. Cadmium toxicity and autophagy: a review.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Review
  12. PlasCAT: Plasmid Cloud Assembly Tool.Bioinformatics (Oxford, England) · 2024
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tong ZhangState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.ORCID 0000-0003-4964-3026
Weiqing XingState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.
Aoming WangState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.
Na ZhangChongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing 400715, China.ORCID 0000-0002-5918-6941
Ling JiaState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.
Sanyuan MaState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.
Qingyou XiaState Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Chongqing 400715, China.ORCID 0000-0002-9263-2886

Funding

Fundamental Research Funds for the Central Universities no. SWU-KT22042National Natural Science Foundation of China no. 32122084, 32030103Natural Science Foundation of Chongqing no. cstc2020jcyj-cxttX0001
6 · The paper itself

Abstract

Lepidopteran species are mostly pests, causing serious annual economic losses. High-quality genome sequencing and assembly uncover the genetic foundation of pest occurrence and provide guidance for pest control measures. Long-read sequencing technology and assembly algorithm advances have improved the ability to timeously produce high-quality genomes. Lepidoptera includes a wide variety of insects with high genetic diversity and heterozygosity. Therefore, the selection of an appropriate sequencing and assembly strategy to obtain high-quality genomic information is urgently needed. This research used silkworm as a model to test genome sequencing and assembly through high-coverage datasets by de novo assemblies. We report the first nearly complete telomere-to-telomere reference genome of silkworm

Indexed as

GenomeGenomicsBase SequenceChromosome MappingHigh-Throughput Nucleotide SequencingSequence Analysis, DNAassembly evaluationbenchmarkingbiological controlde novo assemblylepidopteran pestlong-read sequencing

Identifiers

PMID36614092
PMCPMC9820851

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.