Evidence map›Paper›PMID 36611624›Full record

ArticleAnimals : an open access journal from MDPI2022

Assessing Population Structure and Signatures of Selection in Wanbei Pigs Using Whole Genome Resequencing Data.

Wei Zhang, Linqing Liu, Mei Zhou, Shiguang Su, Lin Dong, Xinxin Meng, Xueting Li, Chonglong Wang

Abstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Wei ZhangKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.ORCID 0000-0001-7673-1924
Linqing LiuKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Mei ZhouKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Shiguang SuKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Lin DongKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Xinxin MengKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Xueting LiKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.
Chonglong WangKey Laboratory of Pig Molecular Quantitative Genetics, Anhui Academy of Agricultural Sciences, Hefei 230031, China.

Funding

Anhui Academy of Agricultural Sciences Key Laboratory Project 2021YL023Anhui Province Natural Science Foundation Youth Fund Project 2108085QC135Anhui Provincial Key Laboratory of Livestock and Poultry Product Safety Engineering Young Talents Support Engineering Innovation Guidance Fund XMT2022-09the Special Fund for Anhui Agricultural Research System AHCYJSTX-05-12the Special Fund for Anhui Agricultural Research System AHCYJSTX-05-23
6 · The paper itself

Abstract

Wanbei pig (WBP) is one of the indigenous pig resources in China and has many germplasm characteristics. However, research on its genome is lacking. To assess the genomic variation, population structure, and selection signatures, we resequenced 18 WBP for the first time and performed a comprehensive analysis with resequenced data of 10 Asian wild boars. In total, 590.03 Gb of data and approximately 41 million variants were obtained. Polymorphism level (θπ) ratio and genetic differentiation (fixation index)-based cross approaches were applied, and 539 regions, which harbored 176 genes, were selected. Functional analysis of the selected genes revealed that they were associated with lipid metabolism (

Indexed as

Asian wild boarfixation index (FST)polymorphism levels (θπ)selection signaturesWanbei pigwhole genome resequencing

Identifiers

PMID36611624
PMCPMC9817800

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.