Evidence map›Paper›PMID 36611170›Full record

ArticleClinical epigenetics2023

Genetic, DNA methylation, and immune profile discrepancies between early-stage single primary lung cancer and synchronous multiple primary lung cancer.

Fenglei Yu, Xiaojie Huang, Danting Zhou, Zhenyu Zhao, Fang Wu, Banglun Qian, Qiang Wang, Juan Chen, Qingchun Liang, Yi Jiang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  7. Frontiers in immunology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Fenglei YuDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Xiaojie HuangDepartment of Cardiovascular Surgery, Second Xiangya Hospital of Central South University, Changsha, Hunan, People's Republic of China.
Danting ZhouDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Zhenyu ZhaoDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Fang WuDepartment of Oncology, Second Xiangya Hospital of Central South University, Changsha, Hunan, People's Republic of China.
Banglun QianDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Qiang WangDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Juan ChenDepartment of Radiology, Second Xiangya Hospital of Central South University, Changsha, Hunan, People's Republic of China.
Qingchun LiangDepartment of Pathology, Second Xiangya Hospital of Central South University, Changsha, Hunan, People's Republic of China.
Yi JiangDepartment of Pathology, Second Xiangya Hospital of Central South University, Changsha, Hunan, People's Republic of China.
Qi DingGeneplus-Beijing Institute, Beijing, People's Republic of China.
Qiongzhi HeGeneplus-Beijing Institute, Beijing, People's Republic of China.
Jingqun TangDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Xiang WangDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Wenliang LiuDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China.
Chen ChenDepartment of Thoracic Surgery, Second Xiangya Hospital of Central South University, Changsha, 410011, Hunan, People's Republic of China. chenchen1981412@csu.edu.cn.
Central South University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo explore the possible carcinogenesis and help better diagnose and treat patients with synchronous multiple primary lung cancers (sMPLC), we systematically investigated the genetic and DNA methylation profiles of early-stage sMPLC and single primary lung cancer (SPLC) and explored the immune profiles in the tumor microenvironment.

methodsHundred and ninety-one patients with 191 nodules in the SPLC group and 132 patients with 295 nodules in the sMPLC group were enrolled. All the samples were subjected to wide panel-genomic sequencing. Genome-wide DNA methylation was assessed using the Infinium Human Methylation 850 K BeadChip. RNA-seq and CIBERSORT analyses were performed to identify the immune characteristics in these two groups.

resultsLesions from sMPLC patients had lower TMB levels than that from SPLC patients. sMPLC had a similar genetic mutational landscape with SPLC, despite some subgroup genetic discrepancies. Distinct DNA methylation patterns were identified between the two groups. The differentially methylated genes were related to immune response pathways. RNA-seq analyses revealed more immune-related DEGs in sMPLC. Accordingly, more immune-related biological processes and pathways were identified in sMPLC. Aberrant DNA methylation was associated with the abnormal expression of immune-related genes. CIBERSORT analysis revealed the infiltration of immune cells was different between the two groups.

conclusionOur study for the first time demonstrated genetic, epigenetic, and immune profile discrepancies between sMPLC and SPLC. Relative to the similar genetic mutational landscape, the DNA methylation patterns and related immune profiles were significantly different between sMPLC and SPLC, indicating their essential roles in the initiation and development of sMPLC.

Indexed as

Lung NeoplasmsNeoplasms, Multiple PrimaryDNA MethylationGenomeHumansMutationTumor MicroenvironmentDNA methylationGene mutationImmune profileSynchronous multiple primary lung cancersTumor microenvironment

Identifiers

PMID36611170
PMCPMC9824942
OpenAlexW4313642869

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.