Evidence map›Paper›PMID 36611062›Full record

ArticleCommunications biology2023

Phase-separating pyrenoid proteins form complexes in the dilute phase.

Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
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  11. SAGA1 and SAGA2 promote starch formation around proto-pyrenoids in Arabidopsis chloroplasts.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Review
  14. TheActa biochimica et biophysica Sinica · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Guanhua HeDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA.ORCID 0000-0002-5200-1975
Trevor GrandPreDepartment of Physics, Princeton University, Princeton, NJ, 08544, USA.ORCID 0000-0002-3565-6873
Hugh WilsonLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA.
Yaojun ZhangCenter for the Physics of Biological Function, Princeton University, Princeton, NJ, USA.
Martin C JonikasDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA. mjonikas@princeton.edu.ORCID 0000-0002-9519-6055
Ned S WingreenDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA. wingreen@princeton.edu.ORCID 0000-0001-7384-2821
Quan WangLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08544, USA. quan.wang@nih.gov.ORCID 0000-0001-7692-6721
Princeton University · USHoward Hughes Medical Institute · USJohns Hopkins University · US

Funding

Single-molecule dynamics in solution with anti-Brownian trappingZIADK075171 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI WANG, QUAN · 2022 to 2025
$5.4M
Learning principles from the pyrenoid, a phase-separated organelleR01GM140032 · NIGMS · PRINCETON UNIVERSITY · PI JONIKAS, MARTIN CASIMIR, WINGREEN, NED S · 2021 to 2024
$2.0M
NIGMS NIH HHS R01 GM140032
6 · The paper itself

Abstract

While most studies of biomolecular phase separation have focused on the condensed phase, relatively little is known about the dilute phase. Theory suggests that stable complexes form in the dilute phase of two-component phase-separating systems, impacting phase separation; however, these complexes have not been interrogated experimentally. We show that such complexes indeed exist, using an in vitro reconstitution system of a phase-separated organelle, the algal pyrenoid, consisting of purified proteins Rubisco and EPYC1. Applying fluorescence correlation spectroscopy (FCS) to measure diffusion coefficients, we found that complexes form in the dilute phase with or without condensates present. The majority of these complexes contain exactly one Rubisco molecule. Additionally, we developed a simple analytical model which recapitulates experimental findings and provides molecular insights into the dilute phase organization. Thus, our results demonstrate the existence of protein complexes in the dilute phase, which could play important roles in the stability, dynamics, and regulation of condensates.

Indexed as

PlastidsRibulose-Bisphosphate CarboxylaseRibulose-Bisphosphate Carboxylase

Identifiers

PMID36611062
PMCPMC9825591
OpenAlexW4313679452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.