Evidence map›Paper›PMID 36610787›Full record

ArticleNucleic acids research2023

Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.

Shr-Hau Hung, Gregory I Elliott, Thakku R Ramkumar, Lyubomyr Burtnyak, Callum J McGrenaghan, Sana Alkuzweny, Samia Quaiyum, Dirk Iwata-Reuyl, Xiaobei Pan, Brian D Green and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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  8. The oncogene SLC35F2 is a high-specificity transporter for the micronutrients queuine and queuosine.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  13. Review
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  16. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
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  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Shr-Hau HungDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.ORCID 0000-0001-9067-2035
Gregory I ElliottDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.ORCID 0000-0003-2048-4148
Thakku R RamkumarDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.ORCID 0000-0001-9739-244X
Lyubomyr BurtnyakSchool of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin 2, Ireland.
Callum J McGrenaghanSchool of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin 2, Ireland.
Sana AlkuzwenyDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.
Samia QuaiyumDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.
Dirk Iwata-ReuylDepartment of Chemistry, PO Box 751 Portland State University, Portland, OR 97207, USA.ORCID 0000-0001-9456-3864
Xiaobei PanSchool of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK.ORCID 0000-0002-6526-1338
Brian D GreenSchool of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK.
Vincent P KellySchool of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin 2, Ireland.ORCID 0000-0001-7067-5407
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-9955-3785
Manal A SwairjoDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.ORCID 0000-0003-1334-1763
San Diego State University · USTrinity College Dublin · IEUniversity of Florida · USQueen's University Belfast · GBPortland State University · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
RNA modification: Structure and MechanismR01GM110588 · NIGMS · WESTERN UNIVERSITY OF HEALTH SCIENCES · PI SWAIRJO, MANAL A · 2014 to 2024
$3.9M
Study of queuosine salvage and function in eukaryotes; a forgotten micronutrientR01GM132254 · NIGMS · UNIVERSITY OF FLORIDA · PI ALFONZO, JUAN D, DE CRECY-LAGARD, VALERIE A · 2019 to 2022
$1.6M
Medical Research Council MC_PC_18038NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM110588NIGMS NIH HHS R01 GM132254
6 · The paper itself

Abstract

Eukaryotic life benefits from-and ofttimes critically relies upon-the de novo biosynthesis and supply of vitamins and micronutrients from bacteria. The micronutrient queuosine (Q), derived from diet and/or the gut microbiome, is used as a source of the nucleobase queuine, which once incorporated into the anticodon of tRNA contributes to translational efficiency and accuracy. Here, we report high-resolution, substrate-bound crystal structures of the Sphaerobacter thermophilus queuine salvage protein Qng1 (formerly DUF2419) and of its human ortholog QNG1 (C9orf64), which together with biochemical and genetic evidence demonstrate its function as the hydrolase releasing queuine from queuosine-5'-monophosphate as the biological substrate. We also show that QNG1 is highly expressed in the liver, with implications for Q salvage and recycling. The essential role of this family of hydrolases in supplying queuine in eukaryotes places it at the nexus of numerous (patho)physiological processes associated with queuine deficiency, including altered metabolism, proliferation, differentiation and cancer progression.

Indexed as

ChloroflexiGlycoside HydrolasesNucleoside QGuanineHumansMicronutrientsProteinsRNA, TransferGlycoside HydrolasesGuanineMicronutrientsNucleoside QProteinsqueuineRNA, Transfer

Identifiers

PMID36610787
PMCPMC9881137
OpenAlexW4313704321

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.