Evidence map›Paper›PMID 36609964›Full record

ArticleJournal of medical virology2023

Upregulation of PD-L1 by SARS-CoV-2 promotes immune evasion.

Hsiang-Chi Huang, Shih-Han Wang, Guo-Chen Fang, Wen-Cheng Chou, Chun-Che Liao, Cheng-Pu Sun, Jia-Tsrong Jan, Hsiu-Hua Ma, Hui-Ying Ko, Yi-An Ko and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
  6. PD-L1: From cancer immunotherapy to therapeutic implications in multiple disorders.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Frontiers in immunology · 2024
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 4 institutions in 2 countries.

Hsiang-Chi HuangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-5413-9775
Shih-Han WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Guo-Chen FangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Wen-Cheng ChouInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chun-Che LiaoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Cheng-Pu SunInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jia-Tsrong JanGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Hsiu-Hua MaGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Hui-Ying KoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yi-An KoBiomedical Translational Research Center, Academia Sinica, Taipei, Taiwan.
Ming-Tsai ChiangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jian-Jong LiangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chun-Tse KuoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Te-An LeeInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Diego Morales-ScheihingDepartment of Neurology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Chen-Yang ShenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Shih-Yu ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Louise D McCulloughDepartment of Neurology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Lu CuiDepartment of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Gerlinde WernigDepartment of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Mi-Hua TaoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yi-Ling LinInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yao-Ming ChangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Shu-Ping WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yun-Ju LaiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chia-Wei LiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Institute of Biomedical Sciences, Academia Sinica · TWGenomics Research Center, Academia Sinica · TWStanford Medicine · USUniversity of Massachusetts Lowell · US

Funding

Sex specific immune response to SARS-CoV-2 leads to chronic neurologic symptomsR01MH127856 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LIU, FUDONG, MCCULLOUGH, LOUISE D. · 2021 to 2025
$3.7M
NIMH NIH HHS R01 MH127856
6 · The paper itself

Abstract

Patients with severe COVID-19 often suffer from lymphopenia, which is linked to T-cell sequestration, cytokine storm, and mortality. However, it remains largely unknown how severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) induces lymphopenia. Here, we studied the transcriptomic profile and epigenomic alterations involved in cytokine production by SARS-CoV-2-infected cells. We adopted a reverse time-order gene coexpression network approach to analyze time-series RNA-sequencing data, revealing epigenetic modifications at the late stage of viral egress. Furthermore, we identified SARS-CoV-2-activated nuclear factor-κB (NF-κB) and interferon regulatory factor 1 (IRF1) pathways contributing to viral infection and COVID-19 severity through epigenetic analysis of H3K4me3 chromatin immunoprecipitation sequencing. Cross-referencing our transcriptomic and epigenomic data sets revealed that coupling NF-κB and IRF1 pathways mediate programmed death ligand-1 (PD-L1) immunosuppressive programs. Interestingly, we observed higher PD-L1 expression in Omicron-infected cells than SARS-CoV-2 infected cells. Blocking PD-L1 at an early stage of virally-infected AAV-hACE2 mice significantly recovered lymphocyte counts and lowered inflammatory cytokine levels. Our findings indicate that targeting the SARS-CoV-2-mediated NF-κB and IRF1-PD-L1 axis may represent an alternative strategy to reduce COVID-19 severity.

Indexed as

COVID-19LymphopeniaAnimalsB7-H1 AntigenCytokinesImmune EvasionMiceNF-kappa BSARS-CoV-2Up-RegulationB7-H1 AntigenCD274 protein, humanCytokinesNF-kappa BChIP-sequencinglymphopeniaPD-L1SARS-CoV-2time-series transcriptomics

Identifiers

PMID36609964
PMCPMC10107526
OpenAlexW4313656227

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.