Evidence map›Paper›PMID 36609629›Full record

ArticleArchives of virology2023

First detection and complete genome sequence of a new tobamovirus naturally infecting Hibiscus rosa-sinensis in Hawaii.

Xupeng Wang, Adriana Larrea-Sarmiento, Alejandro Olmedo-Velarde, Alexandra Kong, Wayne Borth, Jon Y Suzuki, Marisa M Wall, Michael Melzer, John Hu

Abstract read
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In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xupeng WangDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
Adriana Larrea-SarmientoDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
Alejandro Olmedo-VelardeDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
Alexandra KongDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
Wayne BorthDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
Jon Y SuzukiUnited States Department of Agriculture, Agricultural Research Service, U.S. Pacific Basin Agricultural Research Center, Hilo, HI, 96720, USA.
Marisa M WallUnited States Department of Agriculture, Agricultural Research Service, U.S. Pacific Basin Agricultural Research Center, Hilo, HI, 96720, USA.
Michael MelzerDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA.
John HuDepartment of Plant and Environmental Protection Sciences, University of Hawaii, Honolulu, HI, 96822, USA. johnhu@hawaii.edu.ORCID http://orcid.org/0000-0003-3003-4140

Funding

Agricultural Research Service 58-5320-4-012the National Institute of Food and Agriculture Hatch HAW09025-H[1001478]United States Agency for International Development BFS-G-1100002United States Agency for International Development EEM-G-0004-00013
6 · The paper itself

Abstract

High-throughput sequencing was used to analyze Hibiscus rosa-sinensis (family Malvaceae) plants with virus-like symptoms in Hawaii. Bioinformatic and phylogenetic analysis revealed the presence of two tobamoviruses, hibiscus latent Fort Pierce virus (HLFPV) and a new tobamovirus with the proposed name "hibiscus latent Hawaii virus" (HLHV). This is the first report of the complete sequence, genome organization, and phylogenetic characterization of a tobamovirus infecting hibiscus in Hawaii. RT-PCR with virus-specific primers and Sanger sequencing further confirmed the presence of these viruses. Inoculation experiments showed that HLFPV could be mechanically transmitted to Nicotiana benthamiana and N. tabacum, while HLHV could only be mechanically transmitted to N. benthamiana.

Indexed as

HibiscusRosaTobamovirusGenome, ViralHawaiiPhylogeny

Identifiers

PMID36609629

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.