Evidence map›Paper›PMID 36609400›Full record

ArticleNature communications2023

Targeted systematic evolution of an RNA platform neutralizing DNMT1 function and controlling DNA methylation.

Carla L Esposito, Ida Autiero, Annamaria Sandomenico, H Li, Mahmoud A Bassal, Maria L Ibba, Dongfang Wang, Lucrezia Rinaldi, Simone Ummarino, Giulia Gaggi and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Advances in aptamer technology for target-based drug discovery.Journal of pharmaceutical analysis · 2026
    Review
  3. NAR molecular medicine · 2026
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  6. Clinical applications of oligonucleotides for cancer therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  7. Review
  8. Review
  9. Article
  10. Emerging roles of MITF as a crucial regulator of immunity.Experimental & molecular medicine · 2024
    Review
  11. HNEAP Regulates Necroptosis of Cardiomyocytes by Suppressing the mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  12. Review
  13. Interaction of Laurusides 1 and 2 with the 3C-like Protease (MInternational journal of molecular sciences · 2023
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 3 countries.

Carla L EspositoInstitute for Experimental Endocrinology and Oncology "Gaetano Salvatore" (IEOS), CNR, Naples, 80100, Italy. c.esposito@ieos.cnr.it.ORCID 0000-0003-0624-6821
Ida Autiero *Molecular Horizon, Bettona (PG), 06084, Italy.ORCID 0000-0001-8886-8063
Annamaria Sandomenico *Institute of Biostructures and Bioimaging, CNR, Naples, 80100, Italy.
H LiThe Integrative Genomics Core, Beckman Research Institute, City of Hope Medical Center, Duarte, CA, 91010, USA.ORCID 0000-0001-5583-2240
Mahmoud A BassalCancer Science Institute of Singapore, National University of Singapore, 117599, Singapore, Singapore.ORCID 0000-0003-4322-2968
Maria L IbbaInstitute for Experimental Endocrinology and Oncology "Gaetano Salvatore" (IEOS), CNR, Naples, 80100, Italy.ORCID 0000-0003-4684-6178
Dongfang WangDepartment of Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Lucrezia RinaldiHarvard Medical School Initiative for RNA Medicine, Harvard Medical School, Boston, MA, 02115, USA.
Simone UmmarinoHarvard Stem Cell Institute, Harvard Medical School, Boston, MA, 02115, USA.
Giulia GaggiHarvard Medical School Initiative for RNA Medicine, Harvard Medical School, Boston, MA, 02115, USA.
Marta BorchielliniDepartment of Translational Medicine, University of Eastern Piedmont, Novara, 28100, Italy.
Piotr SwiderskiDepartment of Cancer Biology and Molecular Medicine, Beckman Research Institute, City of Hope Medical Center, Duarte, CA, 91010, USA.
Menotti RuvoInstitute of Biostructures and Bioimaging, CNR, Naples, 80100, Italy.ORCID 0000-0001-5997-756X
Silvia CatuognoInstitute for Experimental Endocrinology and Oncology "Gaetano Salvatore" (IEOS), CNR, Naples, 80100, Italy.
Alexander K EbralidzeHarvard Stem Cell Institute, Harvard Medical School, Boston, MA, 02115, USA.
Marcin KortylewskiDepartment of Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte, CA, 91010, USA. MKortylewski@coh.org.ORCID 0000-0002-6003-1816
Vittorio de FranciscisInstitute for Experimental Endocrinology and Oncology "Gaetano Salvatore" (IEOS), CNR, Naples, 80100, Italy. vittorio.defranciscis@irgb.cnr.it.ORCID 0000-0001-6601-1181
Annalisa Di RuscioHarvard Medical School Initiative for RNA Medicine, Harvard Medical School, Boston, MA, 02115, USA. adirusci@bidmc.harvard.edu.ORCID 0000-0002-9705-4245
Harvard University · USCity Of Hope National Medical Center · USInstitute for Experimental Endocrinology and Oncology · ITInstitute of Biostructure and Bioimaging · ITBeth Israel Deaconess Medical Center · USCity of Hope · USInstitute of Genetic and Biomedical Research · ITUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · IT

Funding

PROGRAM IN BLOOD COAGULATION AND VASCULAR BIOLOGYT32HL007917 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Robert C Flaumenhaft · 1999 to 2026
$11.1M
Targeting Transcriptional Regulators for Immunotherapy of Acute Myeloid LeukemiaR01CA213131 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI KORTYLEWSKI, MARCIN · 2017 to 2021
$2.1M
Understanding the role of cell-cycle specific RNAs in hematopoiesisR01DK136116 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Annalisa Di Ruscio · 2022 to 2026
$1.7M
Determining the role of DNMT-interacting RNAs in myeloid disordersR00CA188595 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI DI RUSCIO, ANNALISA · 2017 to 2019
$747k
NCI NIH HHS R00 CA188595NCI NIH HHS R01 CA213131NHLBI NIH HHS T32 HL007917NIDDK NIH HHS R01 DK136116
6 · The paper itself

Abstract

DNA methylation is a fundamental epigenetic modification regulating gene expression. Aberrant DNA methylation is the most common molecular lesion in cancer cells. However, medical intervention has been limited to the use of broadly acting, small molecule-based demethylating drugs with significant side-effects and toxicities. To allow for targeted DNA demethylation, we integrated two nucleic acid-based approaches: DNMT1 interacting RNA (DiR) and RNA aptamer strategy. By combining the RNA inherent capabilities of inhibiting DNMT1 with an aptamer platform, we generated a first-in-class DNMT1-targeted approach - aptaDiR. Molecular modelling of RNA-DNMT1 complexes coupled with biochemical and cellular assays enabled the identification and characterization of aptaDiR. This RNA bio-drug is able to block DNA methylation, impair cancer cell viability and inhibit tumour growth in vivo. Collectively, we present an innovative RNA-based approach to modulate DNMT1 activity in cancer or diseases characterized by aberrant DNA methylation and suggest the first alternative strategy to overcome the limitations of currently approved non-specific hypomethylating protocols, which will greatly improve clinical intervention on DNA methylation.

Indexed as

DNA MethylationRNADNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesEpigenesis, GeneticGene Expression Regulation, NeoplasticDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesRNA

Identifiers

PMID36609400
PMCPMC9823104
OpenAlexW4313645567

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.