Evidence map›Paper›PMID 36609377›Full record

ArticleMicrobial cell factories2023

Enhanced production of D-pantothenic acid in Corynebacterium glutamicum using an efficient CRISPR-Cpf1 genome editing method.

Rui Su, Ting Wang, Taidong Bo, Ningyun Cai, Meng Yuan, Chen Wu, Hao Jiang, Huadong Peng, Ning Chen, Yanjun Li

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Rui Su *College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Ting WangCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Taidong BoCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Ningyun CaiCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Meng YuanCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Chen WuCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Hao JiangCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Huadong PengThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark. hdpeng@biosustain.dtu.dk.
Ning ChenCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.
Yanjun LiCollege of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China. yjli@tust.edu.cn.
Tianjin University of Science and Technology · CNNovo Nordisk Foundation · DK

Funding

European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 899987National Key Research and Development Program of China 2021YFC2100900Natural Science Foundation of Henan province 222300420149
6 · The paper itself

Abstract

backgroundCorynebacterium glutamicum has industrial track records for producing a variety of valuable products such as amino acids. Although CRISPR-based genome editing technologies have undergone immense developments in recent years, the suicide-plasmid-based approaches are still predominant for C. glutamicum genome manipulation. It is crucial to develop a simple and efficient CRISPR genome editing method for C. glutamicum.

resultsIn this study, we developed a RecombinAtion Prior to Induced Double-strand-break (RAPID) genome editing technology for C. glutamicum, as Cpf1 cleavage was found to disrupt RecET-mediated homologous recombination (HR) of the donor template into the genome. The RAPID toolbox enabled highly efficient gene deletion and insertion, and notably, a linear DNA template was sufficient for gene deletion. Due to the simplified procedure and iterative operation ability, this methodology could be widely applied in C. glutamicum genetic manipulations. As a proof of concept, a high-yield D-pantothenic acid (vitamin B5)-producing strain was constructed, which, to the best of our knowledge, achieved the highest reported titer of 18.62 g/L from glucose only.

conclusionsWe developed a RecET-assisted CRISPR-Cpf1 genome editing technology for C. glutamicum that harnessed CRISPR-induced DSBs as a counterselection. This method is of great importance to C. glutamicum genome editing in terms of its practical applications, which also guides the development of CRISPR genome editing tools for other microorganisms.

Indexed as

Corynebacterium glutamicumGene EditingCRISPR-Cas SystemsHumansPantothenic AcidPlasmidsPantothenic AcidCorynebacterium glutamicumCRISPR-Cpf1Genome editingMetabolic engineeringSynthetic biologyVitamin

Identifiers

PMID36609377
PMCPMC9817396
OpenAlexW4313646872

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.