Evidence map›Paper›PMID 36608661›Full record

ArticleCell2023

Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation.

Weili Miao, Douglas F Porter, Vanessa Lopez-Pajares, Zurab Siprashvili, Robin M Meyers, Yunhao Bai, Duy T Nguyen, Lisa A Ko, Brian J Zarnegar, Ian D Ferguson and 14 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
10.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Regulation of RNA-binding proteins by small biomolecules.Nature reviews. Molecular cell biology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. High-Efficiency Genomic Mapping of Chromatin-Associated Targets with CUT&RUN.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Bilirubin Targeting WNK1 to Alleviate NLRP3-Mediated Neuroinflammation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  18. Review
  19. Review
  20. DDX24 spatiotemporally orchestrates VEGF and Wnt signaling during developmental angiogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 1 country.

Weili MiaoProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Douglas F PorterProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Vanessa Lopez-PajaresProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Zurab SiprashviliProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Robin M MeyersProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Yunhao BaiDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Duy T NguyenProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Lisa A KoProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Brian J ZarnegarProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Ian D FergusonProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA; Program in Cancer Biology, Stanford University, Stanford, CA, USA.
Matthew M MillsDepartment of Earth System Science, Stanford University, Stanford, CA, USA.
Christie E Jilly-RehakDepartment of Earth System Science, Stanford University, Stanford, CA, USA.
Cheng-Guo WuMolecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.
Yen-Yu YangDepartment of Chemistry, University of California, Riverside, CA, USA.
Jordan M MeyersProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Audrey W HongProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
David L ReynoldsProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Muthukumar RamanathanDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Shiying TaoProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA.
Sizun JiangCenter for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Boston, MA, USA.
Ryan A FlynnDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.
Yinsheng WangDepartment of Chemistry, University of California, Riverside, CA, USA.
Garry P NolanDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Paul A KhavariProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA; Program in Cancer Biology, Stanford University, Stanford, CA, USA; Veterans Affairs Palo Alto Healthcare System, Palo Alto, CA, USA. Electronic address: khavari@stanford.edu.
Stanford University · USUniversity of California, Riverside · USBeth Israel Deaconess Medical Center · USHarvard University · USVA Palo Alto Health Care System · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
REGULATORS OF EPIDERMAL GENE EXPRESSIONR01AR045192 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 1999 to 2026
$9.9M
Mechanisms of Epidermal Homeostasis and Early NeoplasiaR01AR043799 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 1998 to 2026
$9.1M
Spatial-Temporal Dissection of Stratified Host Tissue Responses to Severe acute respiratory syndrome-related coronaviruses in situ to Understand Intra-host PathogenesisDP2AI171139 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Sizun Jiang · 2022 to 2026
$2.3M
Transcriptional Regulatory Complexes in Epidermal DifferentiationK01AR070895 · NIAMS · STANFORD UNIVERSITY · PI LOPEZPAJARES, VANESSA · 2017 to 2022
$709k
SMALL NON-CODING RNA REGULATION OF RAS-GTPase FUNCTION IN EPIDERMAL HOMEOSTASISK01AR071481 · NIAMS · STANFORD UNIVERSITY · PI ZARNEGAR, BRIAN J · 2017 to 2021
$637k
Mechanisms of lncRNA-mediated control of epidermal proliferation and differentiationF32AR072504 · NIAMS · STANFORD UNIVERSITY · PI PORTER, DOUGLAS F · 2017 to 2018
$116k
REGULATORS OF EPITHELIAL TUMOR PROGRESSIONI01BX001409 · VA · VETERANS ADMIN PALO ALTO HEALTH CARE SYS · PI KHAVARI, PAUL · 2012 to 2025
–
BLRD VA I01 BX001409NHGRI NIH HHS T32 HG000044NIAID NIH HHS DP2 AI171139NIAMS NIH HHS F32 AR072504NIAMS NIH HHS K01 AR070895NIAMS NIH HHS K01 AR071481NIAMS NIH HHS R01 AR043799NIAMS NIH HHS R01 AR045192
6 · The paper itself

Abstract

Glucose is a universal bioenergy source; however, its role in controlling protein interactions is unappreciated, as are its actions during differentiation-associated intracellular glucose elevation. Azido-glucose click chemistry identified glucose binding to a variety of RNA binding proteins (RBPs), including the DDX21 RNA helicase, which was found to be essential for epidermal differentiation. Glucose bound the ATP-binding domain of DDX21, altering protein conformation, inhibiting helicase activity, and dissociating DDX21 dimers. Glucose elevation during differentiation was associated with DDX21 re-localization from the nucleolus to the nucleoplasm where DDX21 assembled into larger protein complexes containing RNA splicing factors. DDX21 localized to specific SCUGSDGC motif in mRNA introns in a glucose-dependent manner and promoted the splicing of key pro-differentiation genes, including GRHL3, KLF4, OVOL1, and RBPJ. These findings uncover a biochemical mechanism of action for glucose in modulating the dimerization and function of an RNA helicase essential for tissue differentiation.

Indexed as

DEAD-box RNA HelicasesGlucoseKeratinocytesCell NucleolusCell NucleusHumansRNA, MessengerDDX21 protein, humanDEAD-box RNA HelicasesGlucoseRNA, MessengerDDX21glucosemRNA splicingRNA helicasestissue differentiation

Identifiers

PMID36608661
PMCPMC10171372
OpenAlexW4313557856

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.