Evidence map›Paper›PMID 36607962›Full record

ArticlePloS one2023

Immune environment and antigen specificity of the T cell receptor repertoire of malignant ascites in ovarian cancer.

Kyoko Yoshida-Court, Tatiana V Karpinets, Aparna Mitra, Travis N Solley, Stephanie Dorta-Estremera, Travis T Sims, Andrea Y Delgado Medrano, Molly B El Alam, Mustapha Ahmed-Kaddar, Erica J Lynn and 7 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Kyoko Yoshida-CourtDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.ORCID 0000-0002-7558-9943
Tatiana V KarpinetsDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Aparna MitraDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Travis N SolleyDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Stephanie Dorta-EstremeraComprehensive Cancer Center, Cancer Biology, Department of Microbiology and Zoology, University of Puerto Rico, Medical Sciences Campus, San Juan, Puerto Rico.
Travis T SimsDepartment of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Andrea Y Delgado MedranoDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Molly B El AlamDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Mustapha Ahmed-KaddarDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Erica J LynnDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
K Jagannadha SastryDepartment of Thoracic/Head and Neck Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Jianhua ZhangDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Andrew FutrealDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Alpa NickSaint Thomas Health/Ascension, Nashville, TN, United States of America.
Karen LuDepartment of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Lauren E ColbertDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Ann H KloppDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.ORCID 0000-0002-2081-0735
The University of Texas MD Anderson Cancer Center · USSaint Thomas Health · USUniversity of Puerto Rico, Medical Sciences Campus · PR

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

We evaluated the association of disease outcome with T cell immune-related characteristics and T cell receptor (TCR) repertoire in malignant ascites from patients with high-grade epithelial ovarian cancer. Ascitic fluid samples were collected from 47 high-grade epithelial ovarian cancer patients and analyzed using flow cytometry and TCR sequencing to characterize the complementarity determining region 3 TCR β-chain. TCR functions were analyzed using the McPAS-TCR and VDJ databases. TCR clustering was implemented using Grouping of Lymphocyte Interactions by Paratope Hotspots software. Patients with poor prognosis had ascites characterized by an increased ratio of CD8+ T cells to regulatory T cells, which correlated with an increased productive frequency of the top 100 clones and decreased productive entropy. TCRs enriched in patients with an excellent or good prognosis were more likely to recognize cancer antigens and contained more TCR reads predicted to recognize epithelial ovarian cancer antigens. In addition, a TCR motif that is predicted to bind the TP53 neoantigen was identified, and this motif was enriched in patients with an excellent or good prognosis. Ascitic fluid in high-grade epithelial ovarian cancer patients with an excellent or good prognosis is enriched with TCRs that may recognize ovarian cancer-specific neoantigens, including mutated TP53 and TEAD1. These results suggest that an effective antigen-specific immune response in ascites is vital for a good outcome in high-grade epithelial ovarian cancer.

Indexed as

AscitesOvarian NeoplasmsCarcinoma, Ovarian EpithelialCD8-Positive T-LymphocytesFemaleHumansImmunityReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID36607962
PMCPMC9821423
OpenAlexW4313598923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.